PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40460.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 599aa MW: 67587.4 Da PI: 8.5978

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.3	2e-13	322	405	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ rl+rg l++++W+ev++ + re g+ +++ +qCk++++ l+k+yk +k+ s++p++ +l+ GAY40460.1 322 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 405 7***********************************998889876789***************9998886......5799999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK 60 RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID 120 EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL 180 TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS 240 VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LESNAAREME 300 LRGSHNVRGT HAATTGGGRE DCWSEGATGT LIEAWGDRYV RLNRGHLRQK DWKEVAESVN 360 SRENGVKPKK TDIQCKNRID TLKKKYKIEK AKPPPSKWPF YYRLDSLIGN DAVSSKKPAN 420 ITLRVKSKPR TSFVGRSVST ENDNLSSDGE ADDDGDDDEI VVKKVHRMED VDLSDGAACR 480 ELARAILKFG EIYERIESAK QKQMMELEKE RLEFIKDVEC ERMNMFMGAQ LEIQKSKRKQ 540 RPASSEGTKE LWKDILLLSP CDSLPTIHEI QLMLRNSKYN HQLVENRYLD GNHLYTPQV

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK  60
RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID  120
EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL  180
TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS  240
VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LESNAAREME  300
LRGSHNVRGT HAATTGGGRE DCWSEGATGT LIEAWGDRYV RLNRGHLRQK DWKEVAESVN  360
SRENGVKPKK TDIQCKNRID TLKKKYKIEK AKPPPSKWPF YYRLDSLIGN DAVSSKKPAN  420
ITLRVKSKPR TSFVGRSVST ENDNLSSDGE ADDDGDDDEI VVKKVHRMED VDLSDGAACR  480
ELARAILKFG EIYERIESAK QKQMMELEKE RLEFIKDVEC ERMNMFMGAQ LEIQKSKRKQ  540
RPASSEGTKE LWKDILLLSP CDSLPTIHEI QLMLRNSKYN HQLVENRYLD GNHLYTPQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	4e-65	Trihelix family protein