PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY40459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 621aa MW: 70129.3 Da PI: 9.1761 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.2 | 2.1e-13 | 353 | 436 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ rl+rg l++++W+ev++ + re g+ +++ +qCk++++ l+k+yk +k+ s++p++ +l+ GAY40459.1 353 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 436 7*************************************998889876789*****************9998886......5799999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence |
MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK 60 RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID 120 EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL 180 TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS 240 VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LERFNEANFI 300 LKEMNKRDLK MGFKLRDYYE INVNNAAREM ELRGSHNVRG THAATTGGGR EDCWSEGATG 360 TLIEAWGDRY VRLNRGHLRQ KDWKEVAESV NSRENGVKPK KTDIQCKNRI DTLKKKYKIE 420 KAKPPPSKWP FYYRLDSLIG NDAVSSKKPA NITLRVKSKP RTSFVGRSVS TENDNLSSDG 480 EADDDGDDDE IVVKKVHRME DVDLSDGAAC RELARAILKF GEIYERIESA KQKQMMELEK 540 ERLEFIKDVE CERMNMFMGA QLEIQKSKRK QRPASSDPID VEKFKIQPSA CRESISRRQS 600 SVYTTSIGNS NAAFVVNQLT R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 3e-65 | Trihelix family protein |