PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40426.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-X1

Protein Properties

Length: 870aa MW: 97362.5 Da PI: 8.4202

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40426.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.9	1.4e-05	185	203	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ GAY40426.1 185 CG-HFCLLLCHPGPCPPCPK 203 .*************96 PP
2	zf-NF-X1	17.6	8.6e-06	240	256	4	20
zf-NF-X1 4 HkCqklCHeGpCppCpq 20 HkC ++CHeGpCppC++ GAY40426.1 240 HKCLQICHEGPCPPCKA 256 ***************95 PP
3	zf-NF-X1	16.5	1.9e-05	397	416	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ GAY40426.1 397 CGRHACKRRCCNGDCPPCSE 416 ******************85 PP
4	zf-NF-X1	17.3	1.1e-05	418	443	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC ++CH+G C pCp+ GAY40426.1 418 CGkrllckNHKCPSPCHRGACAPCPL 443 777777779***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS 60 FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL 120 PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP 180 LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH 240 KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH 300 VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG 360 TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSEICGK 420 RLLCKNHKCP SPCHRGACAP CPLMVTISCA CGETQFEVPC GTEKDQKPPK CRKSCHVIPL 480 CRHRSICKPH KCHYGACPPC RLLCEEEYPC GHSCKLSCHG PRPPPNPEFT LKTKKKKSNH 540 QSEVTPGSPC PPCPELIWRS CVGEHIGAER MMVCSDRTQF SCDNLCGNPL PCGNHYCTKY 600 CHALKSQSSL SVETRSAESC EVCSLPCQKE RLPTCPHSCP LPCHPGVCPS CKVLVKRSCH 660 CGSMVHVFEC IYFNTLSEKE QMAARSCGGP CHRKLPYCTH LCPEICHPGQ CPLPEQCCKK 720 VTVRCGCQTL KKEWQCLDVQ AAYRNIGRDP KDISKNQFGL GLLRCNCDCK SKVQVVDSVL 780 QSRKPKVEEK EPATEKHVGK RRKRRECVRV VNQASRLQRI FTAVKWLLLF VTLLVAVAAG 840 LYYGYKGLLK LSDWMNEVEE QRQRKRFPRI

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS  60
FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL  120
PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP  180
LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH  240
KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH  300
VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG  360
TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSEICGK  420
RLLCKNHKCP SPCHRGACAP CPLMVTISCA CGETQFEVPC GTEKDQKPPK CRKSCHVIPL  480
CRHRSICKPH KCHYGACPPC RLLCEEEYPC GHSCKLSCHG PRPPPNPEFT LKTKKKKSNH  540
QSEVTPGSPC PPCPELIWRS CVGEHIGAER MMVCSDRTQF SCDNLCGNPL PCGNHYCTKY  600
CHALKSQSSL SVETRSAESC EVCSLPCQKE RLPTCPHSCP LPCHPGVCPS CKVLVKRSCH  660
CGSMVHVFEC IYFNTLSEKE QMAARSCGGP CHRKLPYCTH LCPEICHPGQ CPLPEQCCKK  720
VTVRCGCQTL KKEWQCLDVQ AAYRNIGRDP KDISKNQFGL GLLRCNCDCK SKVQVVDSVL  780
QSRKPKVEEK EPATEKHVGK RRKRRECVRV VNQASRLQRI FTAVKWLLLF VTLLVAVAAG  840
LYYGYKGLLK LSDWMNEVEE QRQRKRFPRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein