PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39794.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 624aa MW: 69354.1 Da PI: 6.2301

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.3e-28	69	153	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r+++ k+plWee+s+k+ e g++rs+k+Ckek+en+ k++k++k++++++ ++ +t+++fdqlea GAY39794.1 69 RWPRQETLALLKIRSDMDVVFRDASVKGPLWEEISRKLGELGYHRSAKKCKEKFENVFKYHKRTKDSRSSK--GQGKTYRFFDQLEA 153 8******************************************************************95..77778*****85 PP
2	trihelix	107.5	8.7e-34	446	531	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++++++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a GAY39794.1 446 RWPKVEVEALIKMRTSLDSKYQENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 531 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MLVGEASVSG DLAAATTATA TATATVAARE AENEGGGEAA GSIFGSSNSG EDDKSRVLDE 60 AERGFGGNRW PRQETLALLK IRSDMDVVFR DASVKGPLWE EISRKLGELG YHRSAKKCKE 120 KFENVFKYHK RTKDSRSSKG QGKTYRFFDQ LEAFEHHHPP QLQSPSLKPH QASVSAAAVS 180 VAMPAANNPP SSTTIVPSTT TQHITVPHLT NLTSSGAIPS FPSAAATNPT NLPPPQATTN 240 YPSQSNIPSS FHNISPDLPS NSTSSSTSSD LELEGRRNKK RKWRDFFERL MKQVVDKQEE 300 LQMKFLEAIE KREHERMVRE EAWRMQEMTR INREREILGQ ERSIASAKDA AVMAFLQKLA 360 EQQNPGSQVV ISTSNNSIPA PPIILPPVPA PAPVQSQPPP LQPTSTPAPA PPPPPHQQQP 420 VFSIERTKTD NGGERNNYTG GTSSSRWPKV EVEALIKMRT SLDSKYQENG PKGPLWEEIS 480 AGMRRLGYNR SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYKERNKLE 540 TSSSVLSNQL LKPENSVPLM VRPEQQWPPQ PEHQQDDQAM EDIESDQNVE EDDKDGDDDE 600 EEDDGGGFEI VPNNKPVNSM DANE

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MLVGEASVSG DLAAATTATA TATATVAARE AENEGGGEAA GSIFGSSNSG EDDKSRVLDE  60
AERGFGGNRW PRQETLALLK IRSDMDVVFR DASVKGPLWE EISRKLGELG YHRSAKKCKE  120
KFENVFKYHK RTKDSRSSKG QGKTYRFFDQ LEAFEHHHPP QLQSPSLKPH QASVSAAAVS  180
VAMPAANNPP SSTTIVPSTT TQHITVPHLT NLTSSGAIPS FPSAAATNPT NLPPPQATTN  240
YPSQSNIPSS FHNISPDLPS NSTSSSTSSD LELEGRRNKK RKWRDFFERL MKQVVDKQEE  300
LQMKFLEAIE KREHERMVRE EAWRMQEMTR INREREILGQ ERSIASAKDA AVMAFLQKLA  360
EQQNPGSQVV ISTSNNSIPA PPIILPPVPA PAPVQSQPPP LQPTSTPAPA PPPPPHQQQP  420
VFSIERTKTD NGGERNNYTG GTSSSRWPKV EVEALIKMRT SLDSKYQENG PKGPLWEEIS  480
AGMRRLGYNR SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYKERNKLE  540
TSSSVLSNQL LKPENSVPLM VRPEQQWPPQ PEHQQDDQAM EDIESDQNVE EDDKDGDDDE  600
EEDDGGGFEI VPNNKPVNSM DANE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	282	RRNKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-67	Trihelix family protein