PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY39793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 624aa MW: 69354.1 Da PI: 6.2301 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91 | 1.3e-28 | 69 | 153 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r+++ k+plWee+s+k+ e g++rs+k+Ckek+en+ k++k++k++++++ ++ +t+++fdqlea GAY39793.1 69 RWPRQETLALLKIRSDMDVVFRDASVKGPLWEEISRKLGELGYHRSAKKCKEKFENVFKYHKRTKDSRSSK--GQGKTYRFFDQLEA 153 8********************************************************************95..77778*******85 PP | |||||||
2 | trihelix | 107.5 | 8.7e-34 | 446 | 531 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++++++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a GAY39793.1 446 RWPKVEVEALIKMRTSLDSKYQENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 531 8*********************************************************************8.99***********85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence |
MLVGEASVSG DLAAATTATA TATATVAARE AENEGGGEAA GSIFGSSNSG EDDKSRVLDE 60 AERGFGGNRW PRQETLALLK IRSDMDVVFR DASVKGPLWE EISRKLGELG YHRSAKKCKE 120 KFENVFKYHK RTKDSRSSKG QGKTYRFFDQ LEAFEHHHPP QLQSPSLKPH QASVSAAAVS 180 VAMPAANNPP SSTTIVPSTT TQHITVPHLT NLTSSGAIPS FPSAAATNPT NLPPPQATTN 240 YPSQSNIPSS FHNISPDLPS NSTSSSTSSD LELEGRRNKK RKWRDFFERL MKQVVDKQEE 300 LQMKFLEAIE KREHERMVRE EAWRMQEMTR INREREILGQ ERSIASAKDA AVMAFLQKLA 360 EQQNPGSQVV ISTSNNSIPA PPIILPPVPA PAPVQSQPPP LQPTSTPAPA PPPPPHQQQP 420 VFSIERTKTD NGGERNNYTG GTSSSRWPKV EVEALIKMRT SLDSKYQENG PKGPLWEEIS 480 AGMRRLGYNR SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYKERNKLE 540 TSSSVLSNQL LKPENSVPLM VRPEQQWPPQ PEHQQDDQAM EDIESDQNVE EDDKDGDDDE 600 EEDDGGGFEI VPNNKPVNSM DANE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 282 | RRNKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-67 | Trihelix family protein |