PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39792.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 608aa MW: 67318.6 Da PI: 5.7517

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.5	1e-29	70	154	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++ +r+++lk+plWee+s+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++ ++ +++++fdqlea GAY39792.1 70 RWPRQETLALLKIRSDMDQVFRDSSLKGPLWEEISRKLAELGYNRSAKKCKEKFENVYKYHRRTKDGRTGK--PEGKHYKFFDQLEA 154 8******************************************************************96..55568*****85 PP
2	trihelix	106.7	1.6e-33	414	499	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e+ ++++++ k+plWee++++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyfdql+a GAY39792.1 414 RWPKAEVQALIKFRTELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFDQLDA 499 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MMLGEGDSSS ALLASSSSDA NAVAVASIGG AQDGGAAASD VGGGGSNNSA TEEDKAGRND 60 DGDRSFGGNR WPRQETLALL KIRSDMDQVF RDSSLKGPLW EEISRKLAEL GYNRSAKKCK 120 EKFENVYKYH RRTKDGRTGK PEGKHYKFFD QLEALDHHHH STAPQATTKP PAPLMQAIPW 180 TMNPPSSVPA HIKNVVTSIS AANPIQAVPQ STVIAPPTNP TVSAAAAAPP LAQPVNNLPY 240 SFANVSPNLF SSSTSSSTAS EEYSEERPAG TRKRKWKMFF KRLTKQVIKK QEELQYRFLE 300 EMERRERERI VRDEAWRVQE MARIDREHEI LIQERATAAA KDAAVIAFLQ NISGQQQIPV 360 KENPQPPPPT VVVQPVPAVP PQPQPPATTT PNNKPAANNN NYGGNVVMST SSSRWPKAEV 420 QALIKFRTEL ANKYQENGPK GPLWEEIAAA MRSVGYNRNA KRCKEKWENI NKYFKKVKES 480 NKKRPDDSKT CPYFDQLDAL YREKSNKSSE NNSGCYGNVK AVNHNTAPLM VLPEQQWPLH 540 NNDHLQGQNQ PPLNVNQIQE DDEEEEEEEG NSEDGDEEEE EEEEEGNEGY EIVPNKAAAA 600 AAPMGNAE

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MMLGEGDSSS ALLASSSSDA NAVAVASIGG AQDGGAAASD VGGGGSNNSA TEEDKAGRND  60
DGDRSFGGNR WPRQETLALL KIRSDMDQVF RDSSLKGPLW EEISRKLAEL GYNRSAKKCK  120
EKFENVYKYH RRTKDGRTGK PEGKHYKFFD QLEALDHHHH STAPQATTKP PAPLMQAIPW  180
TMNPPSSVPA HIKNVVTSIS AANPIQAVPQ STVIAPPTNP TVSAAAAAPP LAQPVNNLPY  240
SFANVSPNLF SSSTSSSTAS EEYSEERPAG TRKRKWKMFF KRLTKQVIKK QEELQYRFLE  300
EMERRERERI VRDEAWRVQE MARIDREHEI LIQERATAAA KDAAVIAFLQ NISGQQQIPV  360
KENPQPPPPT VVVQPVPAVP PQPQPPATTT PNNKPAANNN NYGGNVVMST SSSRWPKAEV  420
QALIKFRTEL ANKYQENGPK GPLWEEIAAA MRSVGYNRNA KRCKEKWENI NKYFKKVKES  480
NKKRPDDSKT CPYFDQLDAL YREKSNKSSE NNSGCYGNVK AVNHNTAPLM VLPEQQWPLH  540
NNDHLQGQNQ PPLNVNQIQE DDEEEEEEEG NSEDGDEEEE EEEEEGNEGY EIVPNKAAAA  600
AAPMGNAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	275	RPAGTRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-65	Trihelix family protein