PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39643.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 465aa MW: 51769.3 Da PI: 7.2194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.6e-07	272	293	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H GAY39643.1 272 FCTICGKGFKRDANLRMHMRGH 293 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDLKEGLRAE TWAKSSLAEN EMSKRISSNN PCFTDFNSQQ YQQKWEDPSI LDYDIRINPA 60 FQEFNQPPQN QSSLPCDPTN QIKNPFQMNE NLQTNKMQDW DPKAMLNNLS FLEQKIHELQ 120 DLVHLIVGRR SQILGRPDEL VAQQQQLITA DLTSIIVQLI STAGSLLPSM KHTLSAATPS 180 MGQLGQFGGV PFPPGAGLSD SVQVQNSCAK KVSNQSNPID LVGNSGTQQN HAVEEHDLKD 240 EDDADDGEQL PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP 300 AALAKPHKES SSEPMLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYVC 360 SRCNTKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPLDETI 420 KGLAGPSDRR EGNEATSKIG STNFNFGSSV PNGTGVSDMD AKGES

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDLKEGLRAE TWAKSSLAEN EMSKRISSNN PCFTDFNSQQ YQQKWEDPSI LDYDIRINPA  60
FQEFNQPPQN QSSLPCDPTN QIKNPFQMNE NLQTNKMQDW DPKAMLNNLS FLEQKIHELQ  120
DLVHLIVGRR SQILGRPDEL VAQQQQLITA DLTSIIVQLI STAGSLLPSM KHTLSAATPS  180
MGQLGQFGGV PFPPGAGLSD SVQVQNSCAK KVSNQSNPID LVGNSGTQQN HAVEEHDLKD  240
EDDADDGEQL PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP  300
AALAKPHKES SSEPMLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYVC  360
SRCNTKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPLDETI  420
KGLAGPSDRR EGNEATSKIG STNFNFGSSV PNGTGVSDMD AKGES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-177	C2H2 family protein