PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY39640.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 479aa    MW: 55263.7 Da    PI: 7.0223
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY39640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.21.6e-93934761373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl  A+a ++++ +la + L++l +++s +gd++qR++a+f+ +Laarl+   s  y+ ++ ++t+    +ee+ a++ ++ vsP+++++h+taN
  GAY39640.1  93 LIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTE----EEEFLAFTDLYRVSPYFQLAHFTAN 187
                 689****************************************************99****999888886....788888899**************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaIlea+e++     +++H+iDfd+s+G+QWp+L+q+L++++  ++  s+RiTg+g+    s eel+et++rL +f +++ ++ fef+ l    +   +
  GAY39640.1 188 QAILEAFEEQiennnRALHVIDFDVSYGFQWPSLIQSLSEKAtnGNRISFRITGFGR----SIEELQETENRLVSFSKSFrNLVFEFQGL----IRGSR 278
                 *******99888887899**********************99745555*********....9*****************857*******7....55566 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 l ++r k++E++a nlv++l +l  + +++++    +L+lv+s++P++v++veqe +++  +Fl rf+e+l+y++a+fdsl+  lp+es++r ++E+ +
  GAY39640.1 279 LVNIRKKKHETVAANLVFHLNTLK-NYLKISD----TLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNY 372
                 679999**************9997.5666666....*************************************************************** PP

        GRAS 290 lgreivnvvacegaerre......rhetlekWrerleeaGFkpvplsekaakqaklllr............kvksdgyrveee.sgslv.lgWkdrpLv 368
                 lg+ei++++ c +++  +      r e++e+W++r+e+ GF+ +++s+k   qaklll+            + +++g++v e+ +g ++ lgW+dr L+
  GAY39640.1 373 LGKEIKSMLNCDESDNGNydnyypRYERMETWKARMESHGFGGIKMSSKSLIQAKLLLKirthycplqfdeENNNNGFKVFERyDGKAIsLGWQDRCLL 471
                 ***********998754333334499*******************************973333333222213346677776667777777********* PP

        GRAS 369 svSaW 373
                 +++aW
  GAY39640.1 472 TATAW 476
                 ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MEDTEEEEEF LALRLAIVAS DSCSVDKQRK RKRITRVSLN SSNISPYHHE GCCVSEGKIF  60
RLLQMREQML KLDHKRKGVV DEDGNNNNKG LHLIHLLLIT ATAADENNVS LALENLTELY  120
QTVSLTGDSV QRVVAHFADG LAARLLTRRS PFYEMITKQP TEEEEFLAFT DLYRVSPYFQ  180
LAHFTANQAI LEAFEEQIEN NNRALHVIDF DVSYGFQWPS LIQSLSEKAT NGNRISFRIT  240
GFGRSIEELQ ETENRLVSFS KSFRNLVFEF QGLIRGSRLV NIRKKKHETV AANLVFHLNT  300
LKNYLKISDT LNLVRSIKPT IVTLVEQEGS RSPRNFLSRF MESLHYFAAM FDSLDDCLPQ  360
ESNKRLSIEK NYLGKEIKSM LNCDESDNGN YDNYYPRYER METWKARMES HGFGGIKMSS  420
KSLIQAKLLL KIRTHYCPLQ FDEENNNNGF KVFERYDGKA ISLGWQDRCL LTATAWHCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631DKQRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-54GRAS family protein