PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39545.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HSF

Protein Properties

Length: 384aa MW: 42855.2 Da PI: 8.0737

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.9	1e-35	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+ GAY39545.1 25 FLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ GAY39545.1 113 RRKTA 117 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH VVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VAINHHHHHH QHPHSHSPVL VNGPSFFPFP NRVSISPSDS DEHVNNWCDS PPRGGKGTGV 180 SAVMSSGAGC GGGYNNNNNN ININTSVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY 240 FVQNHVKPVT PSNSYPPSLL LCNTTPSAAA AAPMCANTTP LVQKPLNQLL GYYPTNGTNP 300 KQATHHQAHV LNSPTATSQS SLTILEEPNS NSCKTKLFGV PLQSKKRVHP EYTSNYPANT 360 ETNKARLVMD KDDLGLNLMP PSTC

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH VVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAINHHHHHH QHPHSHSPVL VNGPSFFPFP NRVSISPSDS DEHVNNWCDS PPRGGKGTGV  180
SAVMSSGAGC GGGYNNNNNN ININTSVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY  240
FVQNHVKPVT PSNSYPPSLL LCNTTPSAAA AAPMCANTTP LVQKPLNQLL GYYPTNGTNP  300
KQATHHQAHV LNSPTATSQS SLTILEEPNS NSCKTKLFGV PLQSKKRVHP EYTSNYPANT  360
ETNKARLVMD KDDLGLNLMP PSTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-114	HSF family protein