PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39342.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1004aa MW: 111184 Da PI: 5.1473

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GAY39342.1 597 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 647 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence
MPEPDEENQT RYMPPAPPRT KEVTFMASSI MDVDVVDLDL DNPWPSDQMG FVSNPMSPFL 60 ISEQPCSPLW AFSDADNDDK LSGHVNYPLF LKYIYTCTRN PNSETENPKD NDENRRFPSP 120 LSALMPLENP DGYCMIKERI TQALRYFKDS TEQHVLAQVW VPVKVGGRYV LTTSGQPFVL 180 DPHSNGLHQY RMVSLMYMFS VDGESDGELG LPGRVFWQKL PEWTPNVQYY SSKEYSRLDH 240 ALHHNVRGTM ALPVFEPSGQ SCVAVIELIM TSQKINYAPE VDKVCKALEA VNLKSSEILD 300 YPSTQICNEG RQNALAEILE ILSVVCETHK LPLAQTWVPC RHRSVLAYGG GLKKSCSSID 360 GSCMGQVCMS TTDVAFYVVD GHMWGFREAC VEHHLQKDQG VAGRAFFSLS SCFCKDITQF 420 CKTEYPLVHY ARMFGLTSCF AICLRSTYTG DDDYILEFFL PPAITDSYEQ QTLLGSILAT 480 MKQHFQSLKV ASGIDLEDDE GTIEIIEGEA TADKKLNLRM ESIRIPQSVR SPPQPHALPN 540 GGELGQLDIP EQQLMENFDY MNSRGNAVNV GGNDNPVSLL ENKNTRKLSE RKRGKTEKSI 600 SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES 660 VQGTNGTFGL TSLTTSPLPV AVNSISWPSG LNGSNQQNSP NSKPELLGEK ILSPIYKTPG 720 SDGHTELEDR LSGGRMSTHE EHIHEQNALS PEIGKGKNSP KTGSGSREES DGSPTSHGSC 780 QGNPANESAP AKDVLVSSIH EPRFKVGGSL ELVFQPVGEM NLSAAFSIPD ALVTTEPQEP 840 FGGLLVEDAG SSKDLRNLCP AVADAIVDER LPENSCANLP CAELSPKQHL ATLSQTMPRV 900 YSRQEMKSVT IKATYREDII RFRISLSCGI LELKEEVAKR LKLELGTFDI KYLDDDQEWV 960 LIACDADLQE CLDISRSSGS NMIRLSIHDI MANLGSSCES TGEL

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence

MPEPDEENQT RYMPPAPPRT KEVTFMASSI MDVDVVDLDL DNPWPSDQMG FVSNPMSPFL  60
ISEQPCSPLW AFSDADNDDK LSGHVNYPLF LKYIYTCTRN PNSETENPKD NDENRRFPSP  120
LSALMPLENP DGYCMIKERI TQALRYFKDS TEQHVLAQVW VPVKVGGRYV LTTSGQPFVL  180
DPHSNGLHQY RMVSLMYMFS VDGESDGELG LPGRVFWQKL PEWTPNVQYY SSKEYSRLDH  240
ALHHNVRGTM ALPVFEPSGQ SCVAVIELIM TSQKINYAPE VDKVCKALEA VNLKSSEILD  300
YPSTQICNEG RQNALAEILE ILSVVCETHK LPLAQTWVPC RHRSVLAYGG GLKKSCSSID  360
GSCMGQVCMS TTDVAFYVVD GHMWGFREAC VEHHLQKDQG VAGRAFFSLS SCFCKDITQF  420
CKTEYPLVHY ARMFGLTSCF AICLRSTYTG DDDYILEFFL PPAITDSYEQ QTLLGSILAT  480
MKQHFQSLKV ASGIDLEDDE GTIEIIEGEA TADKKLNLRM ESIRIPQSVR SPPQPHALPN  540
GGELGQLDIP EQQLMENFDY MNSRGNAVNV GGNDNPVSLL ENKNTRKLSE RKRGKTEKSI  600
SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES  660
VQGTNGTFGL TSLTTSPLPV AVNSISWPSG LNGSNQQNSP NSKPELLGEK ILSPIYKTPG  720
SDGHTELEDR LSGGRMSTHE EHIHEQNALS PEIGKGKNSP KTGSGSREES DGSPTSHGSC  780
QGNPANESAP AKDVLVSSIH EPRFKVGGSL ELVFQPVGEM NLSAAFSIPD ALVTTEPQEP  840
FGGLLVEDAG SSKDLRNLCP AVADAIVDER LPENSCANLP CAELSPKQHL ATLSQTMPRV  900
YSRQEMKSVT IKATYREDII RFRISLSCGI LELKEEVAKR LKLELGTFDI KYLDDDQEWV  960
LIACDADLQE CLDISRSSGS NMIRLSIHDI MANLGSSCES TGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein