PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY39327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 639aa MW: 71961.1 Da PI: 6.7426 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.9 | 6.7e-22 | 123 | 212 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF ++ GAY39327.1 123 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRI 212 88****************************9445555669***********************************************865 PP | |||||||
2 | Auxin_resp | 85.5 | 1e-28 | 214 | 277 | 19 | 83 |
Auxin_resp 19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 + ts+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk GAY39327.1 214 TRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 277 579**************************************************.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence |
MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGERV YYFPQGHMEQ LEASTNQELN 60 QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV 120 HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RIITRTSQFI ISLNKYLEAV NNKFAVGMRY 240 KMRFEGEDSP ERRFSGTVVG VEDFSPHWKD SKWRSLKVQW DEPASITRPD RVSPWEIEPF 300 VASATPNLVQ PVLAKNKRPR LPMEVPPLDL PSAASAPWSA RLAQSHNLTQ LSVTAEDKRI 360 DNHVAWHHKH SDFSSNSNFM SRTQSDGEWL TSPRVKFSQQ LFQEAIDDNK NISAWPAHSG 420 HSTPHPSKPN NDTLLEQVET GRKTETGTSC RLFGIELINH ATSSAPSEKV PVSSLTTEGH 480 IISTISAAAD SDGKSDIAKE FKEKKQEQVQ VSPKESQSKQ SCLTSNRSRT KVQMQGVAVG 540 RAVDLTTLVG YDHLIDELEE MFDIKGQLHT RTKWEIVYTD DEGDMMLVGD DPWHEFCNMV 600 KRIFICSSQD VKKMSPGSKL PMFSIEGEDI LLSSDSAEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |