PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39326.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 687aa MW: 77265.5 Da PI: 6.936

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.8	7.5e-22	123	212	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF ++ GAY39326.1 123 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRI 212 88**************************9445555669*********************************************865 PP
2	Auxin_resp	85.4	1.2e-28	214	277	19	83
Auxin_resp 19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 + ts+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk GAY39326.1 214 TRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 277 579************************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGERV YYFPQGHMEQ LEASTNQELN 60 QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV 120 HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RIITRTSQFI ISLNKYLEAV NNKFAVGMRY 240 KMRFEGEDSP ERRFSGTVVG VEDFSPHWKD SKWRSLKVQW DEPASITRPD RVSPWEIEPF 300 VASATPNLVQ PVLAKNKRPR LPMEVPPLDL PSAASAPWSA RLAQSHNLTQ LSVTAEDKRI 360 DNHVAWHHKH SDFSSNSNFM SRTQSDGEWL TSPRVKFSQQ LFQEAIDDNK NISAWPAHSG 420 HSTPHPSKPN NDTLLEQVET GRKTETGTSC RLFGIELINH ATSSAPSEKV PVSSLTTEGH 480 IISTISAAAD SDGKSDIAKE FKEKKQEQVQ VSPKESQSKQ SCLTSNRSRT KVQMQGVAVG 540 RAVDLTTLVG YDHLIDELEE MFDIKGQLHT RTKWEIVYTD DEGDMMLVGD DPWHEFCNMV 600 KRIFICSSQD VKKMSPGSKL PMFSIEVFVV VVVFGGSRLW FIFGLRIGGR AKVEWEGGHG 660 SMLISIVRFL ELTIEEETCN VNVAASA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGERV YYFPQGHMEQ LEASTNQELN  60
QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV  120
HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RIITRTSQFI ISLNKYLEAV NNKFAVGMRY  240
KMRFEGEDSP ERRFSGTVVG VEDFSPHWKD SKWRSLKVQW DEPASITRPD RVSPWEIEPF  300
VASATPNLVQ PVLAKNKRPR LPMEVPPLDL PSAASAPWSA RLAQSHNLTQ LSVTAEDKRI  360
DNHVAWHHKH SDFSSNSNFM SRTQSDGEWL TSPRVKFSQQ LFQEAIDDNK NISAWPAHSG  420
HSTPHPSKPN NDTLLEQVET GRKTETGTSC RLFGIELINH ATSSAPSEKV PVSSLTTEGH  480
IISTISAAAD SDGKSDIAKE FKEKKQEQVQ VSPKESQSKQ SCLTSNRSRT KVQMQGVAVG  540
RAVDLTTLVG YDHLIDELEE MFDIKGQLHT RTKWEIVYTD DEGDMMLVGD DPWHEFCNMV  600
KRIFICSSQD VKKMSPGSKL PMFSIEVFVV VVVFGGSRLW FIFGLRIGGR AKVEWEGGHG  660
SMLISIVRFL ELTIEEETCN VNVAASA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein