PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39025.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 602aa MW: 65159 Da PI: 6.3865

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	246	305	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +v+++tYeg+Hnh+ GAY39025.1 246 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSVLITTYEGTHNHP 305 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MEEKRAMDDV LRISGRTGAA ADEEKGVDSV GDDHKEEVVA EHPVLTNAKG SSLGPESKPS 60 SSSRKEQDDQ LETARAEMGE VRQENERLKM YLNRIMKDYQ TLQTQFVNIV HQEAKKSTET 120 SNDHDRDKEE VELVSLSLGR FPSDSKKDEK NKTSSLVKEE EQFQEGLSLA LDCKFEASNK 180 SDANESLTNP SPAQSLEEPK EEAGETWPPG KGLNKTMRNG DDEMLQQSHV KKARVSVRAR 240 CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCAED MSVLITTYEG 300 THNHPLPVSA TAMASTTSAA ASMLLSGSTS SSSSSSRPGS TAAITVPNNL LMHGLNFYLS 360 DKSKQIYAPN SSSSLSASPL HPTITLDLTT TTAPSSSSSP FSRFTSNYPP APRYSSTNLN 420 FSSTESSSLM SWSNNGLLSY GSCTQPYIKN NQIGSLNMGS RQPADNIFQS YMQKNNPNPN 480 LPPQQSLPAE TIAAATKAIT ADPSFQSALA VALKSIIGNG NGSGVNNNQV NGDNLGQKLK 540 WDEQFLETVK GGGCATSYLN KSSSASSHHQ PGSLIFLPPN SLPFSTSKSA SASPADDREH 600 TD

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MEEKRAMDDV LRISGRTGAA ADEEKGVDSV GDDHKEEVVA EHPVLTNAKG SSLGPESKPS  60
SSSRKEQDDQ LETARAEMGE VRQENERLKM YLNRIMKDYQ TLQTQFVNIV HQEAKKSTET  120
SNDHDRDKEE VELVSLSLGR FPSDSKKDEK NKTSSLVKEE EQFQEGLSLA LDCKFEASNK  180
SDANESLTNP SPAQSLEEPK EEAGETWPPG KGLNKTMRNG DDEMLQQSHV KKARVSVRAR  240
CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCAED MSVLITTYEG  300
THNHPLPVSA TAMASTTSAA ASMLLSGSTS SSSSSSRPGS TAAITVPNNL LMHGLNFYLS  360
DKSKQIYAPN SSSSLSASPL HPTITLDLTT TTAPSSSSSP FSRFTSNYPP APRYSSTNLN  420
FSSTESSSLM SWSNNGLLSY GSCTQPYIKN NQIGSLNMGS RQPADNIFQS YMQKNNPNPN  480
LPPQQSLPAE TIAAATKAIT ADPSFQSALA VALKSIIGNG NGSGVNNNQV NGDNLGQKLK  540
WDEQFLETVK GGGCATSYLN KSSSASSHHQ PGSLIFLPPN SLPFSTSKSA SASPADDREH  600
TD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-71	WRKY family protein