PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY38972.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 278aa    MW: 30064.3 Da    PI: 5.2387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY38972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-11157204455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  GAY38972.1 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204
                 8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MDPPLVNESS FSAANPSSYS LAEIWPFPIN NGGAGDAGLR MGNMGHGFGE SSALRDGSME  60
ESTVTEQSGG GCGRKRRDLS SEDESSKIVS TTSSANDLND SNGKWMKTSG SKNENGSKAE  120
VEASSAAGNK PAESSKPSEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV  180
PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNLTPTIEGF HPKDLGEQAF  240
DATGMIFGSQ TAREYAQGSQ QDWLHMQVGG SFERATEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-81bHLH family protein