PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38860.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 502aa MW: 55959.2 Da PI: 8.0788

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	9e-12	63	109	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +lP + kK++Ka++L A++Y+k+Lq GAY38860.1 63 DHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQ 109 699**********************.....9****************9 PP
2	HLH	41.1	3.2e-13	317	363	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f L l+P + kK +Ka+iL ++Y+k+Lq GAY38860.1 317 DHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 363 5999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MDASSAKWLA ELGMDEYNII HQCHMESVAD LFSSKQDITA ALGGNLKQSL SYPVTRTPAL 60 AQDHIMAERK RREKLSQRFI ALSAILPGLK KMDKASVLGD AIRYVKELQE RVEVLEEQTK 120 KRTVESVVYV KKSQLVVSGT DDESSSCDDN SEISTSDGTL PEIEARVSDK DVLIRIHCEK 180 QKGLLPKLIS QLEMLHLSIT NTSVLPFGNS TLDITIIALK NAEFCTTMKD LVKDIRLAFL 240 KFIPKASPSS SQIISFENSM TSSPAPTVAG SSFHGNINSS SSLISQGSYL DQFCSKKKVQ 300 EPRRVSSVIR DPSHAKDHVI AERKRREKLN QRFIALSALV PGLKKTDKAS ILGDSIKYLK 360 QLQERVKALE EQTSKKTVES MIIVKKSQMI YTDDETSPTD INFDAQSNQY LPEIEVRVSD 420 RDVLIRIHCE KNNNKGHLAN ILSEIENVHH LSVLSCNVLP FGNSTVDITV VAQMDVESDV 480 TVKDLVKNLQ PALRKFMMRA VS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MDASSAKWLA ELGMDEYNII HQCHMESVAD LFSSKQDITA ALGGNLKQSL SYPVTRTPAL  60
AQDHIMAERK RREKLSQRFI ALSAILPGLK KMDKASVLGD AIRYVKELQE RVEVLEEQTK  120
KRTVESVVYV KKSQLVVSGT DDESSSCDDN SEISTSDGTL PEIEARVSDK DVLIRIHCEK  180
QKGLLPKLIS QLEMLHLSIT NTSVLPFGNS TLDITIIALK NAEFCTTMKD LVKDIRLAFL  240
KFIPKASPSS SQIISFENSM TSSPAPTVAG SSFHGNINSS SSLISQGSYL DQFCSKKKVQ  300
EPRRVSSVIR DPSHAKDHVI AERKRREKLN QRFIALSALV PGLKKTDKAS ILGDSIKYLK  360
QLQERVKALE EQTSKKTVES MIIVKKSQMI YTDDETSPTD INFDAQSNQY LPEIEVRVSD  420
RDVLIRIHCE KNNNKGHLAN ILSEIENVHH LSVLSCNVLP FGNSTVDITV VAQMDVESDV  480
TVKDLVKNLQ PALRKFMMRA VS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	73	ERKRRE
2	69	74	RKRREK
3	322	327	ERKRRE
4	323	328	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-60	bHLH family protein