PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38841.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 353aa MW: 39499.4 Da PI: 4.8498

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	187	230	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L GAY38841.1 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYLKEL 230 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MELTQHGFLE ELLAPPIARR DAWSSFSGGL NEYLPSGWIL DSLDESSTLA AAASNPSSFV 60 GFSAAPSEAS FECPPFTDHL HQGYHPFVDG FTVPEVDTSS YTKNEIPSFP SAQEEYPPMV 120 VEEDRDQLCL RSSDHLHQNH SFEETKSSCA EIEQATSNIT NQGFNMGLCV DRKRKNKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYLKEL LERINKLQEE 240 ETELGANQLL IGKFTELKSN EASVRNSPKF DVERREIDTR IDICCSSKPG LLLSTVNTLE 300 VLGLEIQQCV ISCFNDFSLQ ASCSEAAERR TLLSSEEIKQ ALFSNAGYGG KCL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MELTQHGFLE ELLAPPIARR DAWSSFSGGL NEYLPSGWIL DSLDESSTLA AAASNPSSFV  60
GFSAAPSEAS FECPPFTDHL HQGYHPFVDG FTVPEVDTSS YTKNEIPSFP SAQEEYPPMV  120
VEEDRDQLCL RSSDHLHQNH SFEETKSSCA EIEQATSNIT NQGFNMGLCV DRKRKNKKLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYLKEL LERINKLQEE  240
ETELGANQLL IGKFTELKSN EASVRNSPKF DVERREIDTR IDICCSSKPG LLLSTVNTLE  300
VLGLEIQQCV ISCFNDFSLQ ASCSEAAERR TLLSSEEIKQ ALFSNAGYGG KCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	179	DRKRKNKKL
2	172	194	RKRKNKKLEGQPSKNLMAERRRR
3	173	195	RKRKNKKLEGQPSKNLMAERRRR
4	190	198	DRKRKNKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	5e-92	bHLH family protein