PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38807.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 532aa MW: 58430.3 Da PI: 6.6397

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.6	9.9e-11	250	306	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g GAY38807.1 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 306 57*****************4444.2344336655.7799999***********98 PP
2	AP2	50.4	5.3e-16	349	400	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g GAY38807.1 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400 57**************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MAPASNWLSF SLSPMEMWRS SSSSDSQFLP YDASQSAASP HYFLDNFYAN AGWTNPKSQV 60 FFTEEENIQA KELEVAAAQT MAADSSILPS LTQTHPVPKL EDFFADSSSL VHSQTETQDS 120 SLTHIYDHHH HGSAYFNDHQ QDLKAIAGFQ AFSTNSGSEV DDSTSMTRTQ LPAAEFAGHS 180 IESTGNELGF SNSCPTTGCL SLGVNNNATN NANSNNNVNK NQGCNEKKAI VSADSDCTKK 240 VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA 300 ALKYWGPTAT TNFPVSGYTK ELEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ 360 GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG ANAVTNFEMN RYDVEAIGKS 420 SLPIGGAAKR LKLSLESEQK PALTQDQQPQ CSSSSNNINF AALQPVGPAS IPCGIPFDAA 480 TAAALYHQNL YHHFQTTNFN PADSPGSTSS MVPPVALMQQ PAEFFLWPHQ SY

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MAPASNWLSF SLSPMEMWRS SSSSDSQFLP YDASQSAASP HYFLDNFYAN AGWTNPKSQV  60
FFTEEENIQA KELEVAAAQT MAADSSILPS LTQTHPVPKL EDFFADSSSL VHSQTETQDS  120
SLTHIYDHHH HGSAYFNDHQ QDLKAIAGFQ AFSTNSGSEV DDSTSMTRTQ LPAAEFAGHS  180
IESTGNELGF SNSCPTTGCL SLGVNNNATN NANSNNNVNK NQGCNEKKAI VSADSDCTKK  240
VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA  300
ALKYWGPTAT TNFPVSGYTK ELEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ  360
GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG ANAVTNFEMN RYDVEAIGKS  420
SLPIGGAAKR LKLSLESEQK PALTQDQQPQ CSSSSNNINF AALQPVGPAS IPCGIPFDAA  480
TAAALYHQNL YHHFQTTNFN PADSPGSTSS MVPPVALMQQ PAEFFLWPHQ SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	0.0	AP2 family protein