PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38753.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 310aa MW: 34713.2 Da PI: 7.3432

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	105	156	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++++ ++ Lr+l+P++ + ++ + a+i+ A++Y+k+L+ GAY38753.1 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS---YVQRGDQASIVGGAINYVKELE 156 79**************************...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MALEAVVFQQ DPFSYGFKDL GETSDPWSCG FGLEEGAAHS EILLQNGGLG LMTQKMAKTN 60 SSTCGGGGEC FFTGESRPRE APLACHQRKR RRTRSVKNIE EVESQRMTHI FVERNRRKQM 120 KNYLSVLRSL MPPSYVQRGD QASIVGGAIN YVKELEQLVQ TLEAHKRIHI LQQSDDHDHD 180 DAGFSTSIFS NFFSFPQYSD FRPNDSRESS STAPKKPSGP LADIEVTMAE SNANIKILST 240 RYPKQLFKMV TGFHSLGLHV LHLNVATFDN QVLYTFSVKV EEGCHLRSMN EVAAAVYDMM 300 GRVQGEAAFK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	RKRRR
2	88	93	RKRRRT
3	106	117	RMTHIFVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-65	bHLH family protein