PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38629.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 462aa MW: 51547.3 Da PI: 7.2427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.5e-08	365	405	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L GAY38629.1 365 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 405 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
YKRIRIKSII SILSSYVTYI ESRFGVRNIL ISMDSISMAS IWSNQQHEAE ERFMIYNTSN 60 CYNGYGGKMD PTEDLFYPVQ VLQKAQISPL NSNFERRGLD HAASLQDTVG PELSYEATPL 120 SGNLSAPGAE FRMADQSQVA NKAVGVSTTT CSLESLDCLL SATNSNSAET SAEDDDGISI 180 LFSSDCRNLW NFGSNSSAVS SGESENNAPN NFARNNNGPV NNELDHETIS HCSSVQYVNN 240 GRIVHQEELR PGSTKRKNTD DHQSEQFHLF QGGGFKLISE NPPKAKKPRL DKRPSSANIN 300 FQLQASNNSS VSSSIEEPDP EAIAHMKEMI YRAAAFRPVN LGLEVVEKPK RKNVRISTDP 360 QTVAARQRRE RISERIRVLQ RLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALENPGHQKP 420 DHHHSMNYPP TNLAFYSLPF NNNSFPVQTH FSLQNPNHIH RP

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

YKRIRIKSII SILSSYVTYI ESRFGVRNIL ISMDSISMAS IWSNQQHEAE ERFMIYNTSN  60
CYNGYGGKMD PTEDLFYPVQ VLQKAQISPL NSNFERRGLD HAASLQDTVG PELSYEATPL  120
SGNLSAPGAE FRMADQSQVA NKAVGVSTTT CSLESLDCLL SATNSNSAET SAEDDDGISI  180
LFSSDCRNLW NFGSNSSAVS SGESENNAPN NFARNNNGPV NNELDHETIS HCSSVQYVNN  240
GRIVHQEELR PGSTKRKNTD DHQSEQFHLF QGGGFKLISE NPPKAKKPRL DKRPSSANIN  300
FQLQASNNSS VSSSIEEPDP EAIAHMKEMI YRAAAFRPVN LGLEVVEKPK RKNVRISTDP  360
QTVAARQRRE RISERIRVLQ RLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALENPGHQKP  420
DHHHSMNYPP TNLAFYSLPF NNNSFPVQTH FSLQNPNHIH RP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	371	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-60	bHLH family protein