PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38465.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 608aa MW: 66792 Da PI: 8.1145

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.1e-09	489	537	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l GAY38465.1 489 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537 7**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MEVGNLLADD KIEMHLVADA GPTGRCIFNE RSSSGMPKLE SSEGLSNSEN AEADAGKLNT 60 HLESIEEMLT KAKQEESHLL ACGSPDHSST YVLVDGQCSD QHDTLRGIDE KLQSEIPLQE 120 SDLSSQSLSK SLNNQPSIHG ECSNSSNGLV EGQRSTSAVC TSSKPDFSRL MGEICLDNLS 180 IKELHETFKA TFGRETTVKD KQWLKRRIAM GLTNSCDVST SSFIIKDNKL VSKGGEGSCN 240 KEAIEDQAVK PVDGSGKESS LNPGSKMEDQ QIVSSERQRN CSKDYSCADE DPLKEQRNAK 300 RIRKPTRRYI EELSEVESKE HGGKSIASVK NLGLGLMSSR SNTRPVRIAS SNRITLRLDS 360 LGGSGVQIPY VSRVRRSRPR KNVKALMEFH PNGIGMAAKL VKEAVDVHSS EPNRESEGIV 420 LKAGSAPEQI QQQFVVEPEK DNHFSEVASI EQGQNMEPKN KDPSVYTPDD NPATVRVVKG 480 GVRRKHHRAW TLSEVMKLVE GVSKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS 540 LAQTPPDSRM GARKHASSVP IPMPVLLRVR ELAEMQSQFP PNLSSSKLTG SAGRNVNETR 600 SGLESLGF

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MEVGNLLADD KIEMHLVADA GPTGRCIFNE RSSSGMPKLE SSEGLSNSEN AEADAGKLNT  60
HLESIEEMLT KAKQEESHLL ACGSPDHSST YVLVDGQCSD QHDTLRGIDE KLQSEIPLQE  120
SDLSSQSLSK SLNNQPSIHG ECSNSSNGLV EGQRSTSAVC TSSKPDFSRL MGEICLDNLS  180
IKELHETFKA TFGRETTVKD KQWLKRRIAM GLTNSCDVST SSFIIKDNKL VSKGGEGSCN  240
KEAIEDQAVK PVDGSGKESS LNPGSKMEDQ QIVSSERQRN CSKDYSCADE DPLKEQRNAK  300
RIRKPTRRYI EELSEVESKE HGGKSIASVK NLGLGLMSSR SNTRPVRIAS SNRITLRLDS  360
LGGSGVQIPY VSRVRRSRPR KNVKALMEFH PNGIGMAAKL VKEAVDVHSS EPNRESEGIV  420
LKAGSAPEQI QQQFVVEPEK DNHFSEVASI EQGQNMEPKN KDPSVYTPDD NPATVRVVKG  480
GVRRKHHRAW TLSEVMKLVE GVSKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS  540
LAQTPPDSRM GARKHASSVP IPMPVLLRVR ELAEMQSQFP PNLSSSKLTG SAGRNVNETR  600
SGLESLGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	381	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-95	MYB_related family protein