PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38380.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 724aa MW: 79456.5 Da PI: 7.2277

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.6	2.3e-23	113	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ l GAY38380.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--AQDGDL 207 89**************************997556555..8********************************************4..378888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ GAY38380.1 208 CVGIRRA 214 **996 PP
2	Auxin_resp	111.2	1e-36	293	374	3	83
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++++FevvY+Prast+eF+vk++ v++a++v++ GmRfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ GAY38380.1 293 ALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWfMGTISSVQVADPISWPNSPWRLLQ 374 678999**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR 60 VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNESPSSGWN SNNGSCVTGN 240 PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNMRGNG GRVKPEMVLE ALALAASGKP 300 FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA 360 DPISWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PIIHLSPFSP GRKKLRLPQQ 420 LDFPFDGQFA MPLFSGNPLG PSSPLCCLSD NTSAGIQGAR HAQFGISSSD FHVNNKLQSG 480 LFLSSLQRFT PNSRDSDGIL TSHTNSSENL SCLLTMGNSN QNLEKSENIK KHQFLLFGQP 540 ILTEQQISHS CSDDVVSQVL GKSSSDGHSD KVKASSDGSG STHDQRISIE KSSSSEFFWN 600 RSFQATESGL DTGHCKVFLE SEDVGRTLDL SVLSSYEELY RRLAIMFGIE RSDMLSHVLY 660 QDASGAIKRT GDEPFSDFMK SAKRLTILMG SGSDSVGRTW ITGMRTPKNG LDASNKTGPL 720 SIFA

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR  60
VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNESPSSGWN SNNGSCVTGN  240
PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNMRGNG GRVKPEMVLE ALALAASGKP  300
FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA  360
DPISWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PIIHLSPFSP GRKKLRLPQQ  420
LDFPFDGQFA MPLFSGNPLG PSSPLCCLSD NTSAGIQGAR HAQFGISSSD FHVNNKLQSG  480
LFLSSLQRFT PNSRDSDGIL TSHTNSSENL SCLLTMGNSN QNLEKSENIK KHQFLLFGQP  540
ILTEQQISHS CSDDVVSQVL GKSSSDGHSD KVKASSDGSG STHDQRISIE KSSSSEFFWN  600
RSFQATESGL DTGHCKVFLE SEDVGRTLDL SVLSSYEELY RRLAIMFGIE RSDMLSHVLY  660
QDASGAIKRT GDEPFSDFMK SAKRLTILMG SGSDSVGRTW ITGMRTPKNG LDASNKTGPL  720
SIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein