PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37239.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-PHD

Protein Properties

Length: 704aa MW: 79132.7 Da PI: 9.6972

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.5e-06	496	527	22	53
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRa 53 n ++ + +e L+k+l+L+ ++V WF+N R+ GAY37239.1 496 NAKIRRIVKENLSKELSLEPEKVNKWFKNARY 527 55666667899*******************97 PP
2	PHD	34.6	4.4e-12	240	295	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++k GAY37239.1 240 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWFCKFCECK 295 588888854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MPGDGKKVVK HSESGKSCFP KKDSGSELIA SLKFKKGSKI SKSKKLRSKS KCQSKTVNST 60 LLKRTVAESH SKGAGDDFAK SKSISQKNLH IKIDRKGSKN WASSKHKGKN SALVISKGNG 120 EVADGDGETK KLRKGRSKKR RKEKVELDEA SRLQRRTRYL LIKMKLEQNL IDAYSGEGWK 180 GHSREKIRPE KELQRAKKQI LKCKIGIRDA IRQLDSLSSV GCIEGSVIAT DGSVHHEHII 240 CAKCKLREAF PDNDIVLCDG TCNCAFHQKC LDPPLDTESI PPGDQGWFCK FCECKMEIIE 300 SMNAHIGTSF SVNSNWQDIF KEEAAFPDGC SALLNQEEEW PSDDSEDDDY NPERRENSCS 360 ISRAGTDDDP SSSTSLSWFS DSETFSESMR WEMESNGYKN YSVDSSIGSD ETSDGEIICG 420 RRQRRTVDYK KLYDEMFGKD ASAFEQLSED EDWGPAKRRR KEKESDAVNS LMTLYGSEEK 480 CSKVKTAEVK KKLPSNAKIR RIVKENLSKE LSLEPEKVNK WFKNARYLAL KARKVESARQ 540 VPGSPRISKE SSLETEKQNA DVLTFKNSLE ETLVCSPKSL KKIHPKKDSK SVSSGSGFEK 600 NQQKRASLES PVNSNQASIE LSDDVSLKKL LKAKSKKTKK VKFVATGESQ AAEAEMERLC 660 RAKGRLECLK QTLSRFQIEN SKKSNKSHLY DMVYVPIAEL REKL

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MPGDGKKVVK HSESGKSCFP KKDSGSELIA SLKFKKGSKI SKSKKLRSKS KCQSKTVNST  60
LLKRTVAESH SKGAGDDFAK SKSISQKNLH IKIDRKGSKN WASSKHKGKN SALVISKGNG  120
EVADGDGETK KLRKGRSKKR RKEKVELDEA SRLQRRTRYL LIKMKLEQNL IDAYSGEGWK  180
GHSREKIRPE KELQRAKKQI LKCKIGIRDA IRQLDSLSSV GCIEGSVIAT DGSVHHEHII  240
CAKCKLREAF PDNDIVLCDG TCNCAFHQKC LDPPLDTESI PPGDQGWFCK FCECKMEIIE  300
SMNAHIGTSF SVNSNWQDIF KEEAAFPDGC SALLNQEEEW PSDDSEDDDY NPERRENSCS  360
ISRAGTDDDP SSSTSLSWFS DSETFSESMR WEMESNGYKN YSVDSSIGSD ETSDGEIICG  420
RRQRRTVDYK KLYDEMFGKD ASAFEQLSED EDWGPAKRRR KEKESDAVNS LMTLYGSEEK  480
CSKVKTAEVK KKLPSNAKIR RIVKENLSKE LSLEPEKVNK WFKNARYLAL KARKVESARQ  540
VPGSPRISKE SSLETEKQNA DVLTFKNSLE ETLVCSPKSL KKIHPKKDSK SVSSGSGFEK  600
NQQKRASLES PVNSNQASIE LSDDVSLKKL LKAKSKKTKK VKFVATGESQ AAEAEMERLC  660
RAKGRLECLK QTLSRFQIEN SKKSNKSHLY DMVYVPIAEL REKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RKGRSKKRRKE
2	138	142	KKRRK
3	138	165	KKRRKEKVELDEASRLQRRTRYLLIKMK
4	139	166	KKRRKEKVELDEASRLQRRTRYLLIKMK
5	457	484	KKRRKEKVELDEASRLQRRTRYLLIKMK
6	458	485	KKRRKEKVELDEASRLQRRTRYLLIKMK
7	458	463	RRRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-152	HB-PHD family protein