PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36982.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 323aa MW: 36512.4 Da PI: 7.976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	167	186	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+k F+r nL+ H+ GAY36982.1 167 FSCPICSKNFNRYNNLQMHM 186 89*****************9 PP
2	zf-C2H2	15.8	4.1e-05	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ GAY36982.1 251 FMCRKCGKPFAVKGDWRTHEKNC 273 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MTDPYSSNLF NGWFNFKPLH PHYSPNIISN KSIFQSQNYL PSPPPPPPPS PPLKEALPLI 60 NCLSPARRQE EDKQEPFVST AKEEDKVNCT NDDGEETVTV ALHIGLPNPS SSSDHDLDSI 120 RLSSSADVTA ITEDKIKEGV VMSLERLNKG QYWIPTASQI LIGPTQFSCP ICSKNFNRYN 180 NLQMHMWGHG SQYRKGPDSL RGSQPSAMLK LPCYCCAQGC KHNIDHPRAR PLKDFRTLQT 240 HYKRKHGIKP FMCRKCGKPF AVKGDWRTHE KNCGRIWYCV CGSDFKHKRS LKDHIKAFGH 300 GHAALGIECF EEDDEPASEI EHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein