PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36679.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 463aa MW: 51757.2 Da PI: 6.5665

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.2e-16	143	188	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ GAY36679.1 143 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 188 899***************************.*********996 PP
2	Myb_DNA-binding	56.2	7.9e-18	195	238	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ GAY36679.1 195 RRAFTEEEEERLMHAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 238 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MNGLTCNYSP TYSSSLSLSM DVYADMGMGS LSLNNPSYGG AVSEENERAW GFPFIGSCSS 60 NDKPGNNFEE RRQFDIIDVN DNNNNVVRKS NGSDCSDGCG EKSKTLIQYQ CDINLNEEFN 120 PNENSVGPSE KDSDGGQTKT CARGHWRPAE DTKLKELVAL YGPQNWNLIA EKLEGRSGKS 180 CRLRWFNQLD PRINRRAFTE EEEERLMHAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM 240 ARKYREQSSA YRRRKLSQSV NRIMDDMPSF VANDAAAGRI IEPQPYCSSI GSVNGGFYHF 300 TYGNFNGAAG VGLDYHLNGS PYMLLGQQEV ISSSSNQVHH SGFCAQAQQQ TPCDFFSGPK 360 SNDMMGMFSH IRSWDRPMDE VPRNISSSSA SFNLHNCNNP QYLMAMQQSN SNIHNPDSFF 420 DFTASKTQVS PTEPSSSVTG NQVASHFDTI PSRFIDFLGV GAR

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MNGLTCNYSP TYSSSLSLSM DVYADMGMGS LSLNNPSYGG AVSEENERAW GFPFIGSCSS  60
NDKPGNNFEE RRQFDIIDVN DNNNNVVRKS NGSDCSDGCG EKSKTLIQYQ CDINLNEEFN  120
PNENSVGPSE KDSDGGQTKT CARGHWRPAE DTKLKELVAL YGPQNWNLIA EKLEGRSGKS  180
CRLRWFNQLD PRINRRAFTE EEEERLMHAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM  240
ARKYREQSSA YRRRKLSQSV NRIMDDMPSF VANDAAAGRI IEPQPYCSSI GSVNGGFYHF  300
TYGNFNGAAG VGLDYHLNGS PYMLLGQQEV ISSSSNQVHH SGFCAQAQQQ TPCDFFSGPK  360
SNDMMGMFSH IRSWDRPMDE VPRNISSSSA SFNLHNCNNP QYLMAMQQSN SNIHNPDSFF  420
DFTASKTQVS PTEPSSSVTG NQVASHFDTI PSRFIDFLGV GAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	8e-78	MYB family protein