PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36606.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 33181 Da PI: 6.4053

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	80	133	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k GAY36606.1 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 456899***********************************************9 PP
2	HD-ZIP_I/II	130.1	8.9e-42	79	171	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k+++e+L++++++L++e+++ GAY36606.1 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMA 171 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MSCNGMAFFP TNFMLQTPHE DEHQTPTSLN PILPSCAPQD FHGVASFLGK RSMSFSGIDA 60 GEEANGEDDF SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL ARALGLQPRQ 120 VAIWFQNRRA RWKTKQLEKD YDLLKRQYEA VKADREALQA QNQKLHAEIM ALKSREVTES 180 INLNKETEGS CSNRSENSSD IKLDISRTPA IDSPMSTHPT SRNLFPTKST SSVRPTVAAQ 240 LFHNSSSSRP DLQCQKIEQN MQGTKDQESL SSMFCGMDDQ SGFWPWLEQH NFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	136	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-126	HD-ZIP family protein