PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36578.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Whirly

Protein Properties

Length: 265aa MW: 29475.7 Da PI: 8.9593

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	151.2	3.7e-47	90	226	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg.sneGkvrkalkveP 98 s+yk+kaal+v+++ p+f++ldsg++kl+r+G+++l++a+a+++r+ydW++kq+f+ls+te+++lv l+++esceffhdp++++ s Gk+ +l + GAY36578.1 90 SIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKrSLPGKIFPVLDIIK 188 7******************************************************************************765266788888887766 PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 l v v+n+l++ +es+++Pv++ae++vl s+++ GAY36578.1 189 LES---CEVLCCVQNKLINLDESIYIPVTRAEYTVLVSAFN 226 654...456678**********************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MMLQLQCLSS QTLNPKLCPF HSLSNSKGNG FGSFSVTEST SIKKKKLYVK CRQSEYYEQK 60 SFSASPSNSS YAPTDVAVGT LPTRVYVGHS IYKGKAALTV EPRGPEFVSL DSGAVKLSRE 120 GFVMLQFAPA AGVRQYDWSR KQVFSLSVTE IGSLVALGAR ESCEFFHDPF KGKRSLPGKI 180 FPVLDIIKLE SCEVLCCVQN KLINLDESIY IPVTRAEYTV LVSAFNFILP YLLGWHAYAS 240 TIRADDTART NNANPRYGGD YEWNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-101	Whirly family protein