PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY35378.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 547aa    MW: 61393.3 Da    PI: 5.9014
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY35378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.28.5e-1291775471374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L+ cA+avs+gd + a  l+  l++++s +g+p++Rl ay++e+L+arl  s+s++ykal++++     sse +++++++++++P+ kf+++ aN
  GAY35378.1 177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPV---SSELMSYMSVLFQICPYWKFAYMSAN 272
                 5799*****************************************************************8...999999999***************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I eave+e+ +HiiDf+i qG+QW+ Ll+aLa+Rp+g+p +RiTg+++++s+  +   l  +g+rL++fA++++vpfef+  +a +  ++e ++Lrv
  GAY35378.1 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSThaRGGGLDIVGKRLSEFAASCNVPFEFHD-TAMTACEVERQHLRV 370
                 **************************************************9988889999***********************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEa++Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s++++ pr++++ri+ E+++++r+iv
  GAY35378.1 371 QPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIV 469
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kWr+r+++aGF+p++ls  +++ ++ +l+ ++s+ yrvee++g+l+lgW++r++ + SaW+
  GAY35378.1 470 NMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSN-YRVEENDGALYLGWRNRAMATSSAWK 547
                 **************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MQTSQKHQSA ASVQRMYHQP VQGIEPCCLS HVQILDNNIC SDVSSQGTNM SFQTYKEQFY  60
TLDSSTATTG FSHDSPSAVS ISSNRSTFSP QGSQSYQSDP HHSPDNAYGS PMSGSSIVDE  120
SNELRNKLRE LEISLLGPES DIIDSCSCCF KSGTHQDTSA ASWNWDQLME MIPRLDLKQV  180
LIFCAQAVSD GDISTAAGLM RVLEQMVSVS GEPIERLGAY MLEGLRARLE FSGSKIYKAL  240
KCEQPVSSEL MSYMSVLFQI CPYWKFAYMS ANVVIGEAVE NEHIIHIIDF QIAQGTQWMF  300
LLHALAKRPG GSPLVRITGI DDSQSTHARG GGLDIVGKRL SEFAASCNVP FEFHDTAMTA  360
CEVERQHLRV QPGEAVVVNF PFVLHHMPDE SVSTENHRDR LLRLVKSLSP KVVTLVEQES  420
KTNTSPFFHR FLETLDYYTA MFESIDVTRP RDDKQRISAE QHCVARDIVN MIACEGIERV  480
ERHELLGKWR SRFMMAGFTP YRLSPLVTNA VRDVLKDYDS NYRVEENDGA LYLGWRNRAM  540
ATSSAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein