PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY35217.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22393.6 Da    PI: 5.3128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY35217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45e-253886149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krien+s r+v fskRr+g++KKA+EL+ LCdae+a+i+fs++g+ly +
  GAY35217.1 38 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDAEIAIIVFSPKGRLYSF 86
                79*********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MAAKAESSRS LPPSWVSSTV IMPKKKPKGT GRKKIEIKRI ENNSSRKVAF SKRRKGMFKK  60
ASELCRLCDA EIAIIVFSPK GRLYSFGDHV IDKFIEDEIV SDILSSSSSK EAIKENDCVT  120
ELTGEEKSEE EDTREEQTEL EFWWEQPIED LNMEELEKYK SCLEELRSNV AMKVEEMVMR  180
RTCEKDFLGI RDKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-21M-type_MADS family protein