PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY35103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20202.3 Da PI: 8.7196 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.1 | 3.4e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++ rqvtfskRrng++KKA+EL +LC+a +a+++fs+ gk GAY35103.1 10 MVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGK 53 5789999**********************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MGRRKIEMKM VKDSNSRQVT FSKRRNGLFK KANELATLCA AHIAIVVFSP GGKPFSFGHP 60 SVDVVVQRLL NWEMDPKDET NSHVDVEQGA KVEQLNEQLI DLVNQLEIEK KRGEMLDKAL 120 KAKGLSNYCK KSINDLGLDE LLHMKASLEK LRENLKSHID DMEASSSLLL LKGATKENDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-48 | M-type_MADS family protein |