PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY34499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LSD | ||||||||
Protein Properties | Length: 151aa MW: 16732.1 Da PI: 7.6375 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.2 | 1.5e-14 | 62 | 86 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YPrGA++V+C++C+tV GAY34499.1 62 CGSCRQLLAYPRGARHVKCSCCQTV 86 ************************9 PP | |||||||
2 | zf-LSD1 | 41.1 | 2.9e-13 | 100 | 124 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GA+sVRC++C +V GAY34499.1 100 CASCAVLLMYPYGASSVRCSSCRFV 124 **********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MAMAVYLVNP SYYRSQIQME NREKESMENQ EENEEAGPPP GWQPIPPPLP VPSPSEMAQM 60 VCGSCRQLLA YPRGARHVKC SCCQTVNFVL EAHQVGQVKC ASCAVLLMYP YGASSVRCSS 120 CRFVTEIGDH NRRAPWSVQQ GQSAPPSNTV R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-42 | LSD family protein |