PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34170.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 350aa MW: 40051.1 Da PI: 6.5151

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.2e-20	59	114	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k GAY34170.1 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 789999***********************************************998 PP
2	START	46.9	7.7e-16	244	313	1	69
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...dsgealrasgvvdmvlallveellddk 69 ela +a++e++++a+a++p+W+ + +n+de+l++f+++ + ++ea+r+s+vv+m++++lve+l+d++ GAY34170.1 244 ELAVAAMEEFLRMAQAGDPLWTDQV--LNEDEYLRTFPRGIGplgLRSEASRESTVVIMNHVNLVEILMDVA 313 57899******************..********999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK 60 RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH 120 ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP 240 MIVELAVAAM EEFLRMAQAG DPLWTDQVLN EDEYLRTFPR GIGPLGLRSE ASRESTVVIM 300 NHVNLVEILM DVAKSMVKCV LRYCFKSYDH RGPINWSSRK LQWSLASGNN

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH  120
ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP  240
MIVELAVAAM EEFLRMAQAG DPLWTDQVLN EDEYLRTFPR GIGPLGLRSE ASRESTVVIM  300
NHVNLVEILM DVAKSMVKCV LRYCFKSYDH RGPINWSSRK LQWSLASGNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-174	HD-ZIP family protein