PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34167.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 673aa MW: 74213 Da PI: 6.2489

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.1e-20	59	114	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k GAY34167.1 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 789999***********************************************998 PP
2	START	165.4	4e-52	264	411	66	206
CCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS START 66 lddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgil 153 + d qW+ + +a+t+ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p + +++++pSg+l GAY34167.1 264 WTDQNQWSSVFCgivsRAMTIEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSP----ISKCRRRPSGCL 358 556669*9999999*************************************************************99....689999** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 i++++ng+skv+wvehv++++r++h+++++lv+sgla+gak+wvatl+rqce+ GAY34167.1 359 IQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411 *************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK 60 RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH 120 ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP 240 MIVELAVAAM EEFLRMAQAG DPLWTDQNQW SSVFCGIVSR AMTIEVLSTG VAGNYNGALQ 300 VMTAEFQVPS PLVPTRENYF VRYCKQHSDG TWAVVDVSLD NLRPSPISKC RRRPSGCLIQ 360 ELPNGYSKVI WVEHVEVDDR SVHNIYKPLV NSGLAFGAKR WVATLDRQCE RLASSMANNI 420 PAGDLCVITS PEGRKSMLKL AERMVTSFCT GVGASTAHAW TTLSATGSDD VRVMTRKSMD 480 DPGRPPGIVL SAATSFWIPV PPRRIFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG 540 NCVSLLRVNS ANSSQSNMLV LQESCTDSTG SYVIYAPVDI VAMNMVLSGG DPDYVALLPS 600 GFAILPDGPG LNGGRILEVG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER 660 IKAAVMTDNA SCR

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH  120
ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP  240
MIVELAVAAM EEFLRMAQAG DPLWTDQNQW SSVFCGIVSR AMTIEVLSTG VAGNYNGALQ  300
VMTAEFQVPS PLVPTRENYF VRYCKQHSDG TWAVVDVSLD NLRPSPISKC RRRPSGCLIQ  360
ELPNGYSKVI WVEHVEVDDR SVHNIYKPLV NSGLAFGAKR WVATLDRQCE RLASSMANNI  420
PAGDLCVITS PEGRKSMLKL AERMVTSFCT GVGASTAHAW TTLSATGSDD VRVMTRKSMD  480
DPGRPPGIVL SAATSFWIPV PPRRIFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG  540
NCVSLLRVNS ANSSQSNMLV LQESCTDSTG SYVIYAPVDI VAMNMVLSGG DPDYVALLPS  600
GFAILPDGPG LNGGRILEVG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  660
IKAAVMTDNA SCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	HD-ZIP family protein