PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34085.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 295aa    MW: 32259.3 Da    PI: 9.2178
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.8e-37942542135
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.sec...e 74 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                      +   +  ++   +
  GAY34085.1  94 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLnstfpdtpkqlsdekrasegtdQ---QgFDSvelD 189
                 689*************************************************************87776555555444433332110...121112322 PP

         TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                  + +++ ++n+s++++ +++a+s++s++s+ s l+l++      r kar+rarer ++++ +k++
  GAY34085.1 190 GDPNNNYQQNQSQHRSLSKSACSSNSETSKGSGLSLSRselrVNRDKARERARERAAKEKDQKEN 254
                 222233333444447778888888889999888999886344455*********77766666544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MEVEEIQSQT QACKLSRIGN GRLDSTKMSQ KDQYPDDEED GEQQQLQLIK RASANDSGGA  60
LGVNNTAAAA GCGGGNRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT  120
AIQFYDLQDR LGVDQPSKAV EWLIKAAADS IAELPSLNST FPDTPKQLSD EKRASEGTDQ  180
QGFDSVELDG DPNNNYQQNQ SQHRSLSKSA CSSNSETSKG SGLSLSRSEL RVNRDKARER  240
ARERAAKEKD QKENETTRAI FVSATTSSSS FGANPIGKLK FSPTSNANPT IQCNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.17e-48TCP family protein