PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY33824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LSD | ||||||||
Protein Properties | Length: 219aa MW: 24364.3 Da PI: 9.8832 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.3 | 1.5e-14 | 133 | 157 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V GAY33824.1 133 CGHCRTTLMYPHGAPSVKCAVCQYV 157 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MFVVHYVIQL HLSLFQDIYG QLSLTVAKPR VLVGVCQNGN GSANLWRLQD IAHVYTWGNK 60 CEMLLLSHSE SCTSALALKR WPPHSPKRWP PHNFKRKWMQ FMCLSLVSYQ RFSTFLSQIP 120 SRASPNQFAH VICGHCRTTL MYPHGAPSVK CAVCQYVTNV NMANARVPLP ANRPNGTAIP 180 GTLPSTSMTQ TVVVENPMSV DESGKLVSNV VVGVSTEKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-41 | LSD family protein |