PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY33820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LSD | ||||||||
Protein Properties | Length: 225aa MW: 23718.6 Da PI: 9.2911 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.8 | 3.5e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ GAY33820.1 7 CSGCRSVLLYPRGATNVCCALCNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 49.2 | 8.7e-16 | 79 | 103 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV GAY33820.1 79 CGGCRTLLMYTRGATSVRCSCCHTV 103 ************************9 PP | |||||||
3 | zf-LSD1 | 45.2 | 1.5e-14 | 139 | 163 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V GAY33820.1 139 CGHCRTTLMYPHGAPSVKCAVCQYV 163 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MQSQLVCSGC RSVLLYPRGA TNVCCALCNT ITSVPIPGHL WTTLTYGGKA KSLGGGLSRV 60 YHQSLYNASA GMEMAQLICG GCRTLLMYTR GATSVRCSCC HTVNLAPALW PSRGGPRIVP 120 RGGPHTTSRA PNQFAHVICG HCRTTLMYPH GAPSVKCAVC QYVTNVNMAN ARVPLPANRP 180 NGTAIPGTLP STSMTQTVVV ENPMSVDESG KLVSNVVVGV STEKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-72 | LSD family protein |