PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY33305.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 541aa MW: 59830.2 Da PI: 7.1842

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY33305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61	2.8e-19	139	225	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a+ ++ ++l+rg+l++ +Weev++ + r +++++s +qCk+k +nl+kryk +++++ ++ + s++p+f+++e GAY33305.1 139 EWSDAAIACLLDAYLDKFTQLNRGNLRGRDWEEVAATVseRCEKLNKSVEQCKNKVDNLKKRYKLERHRMTNG-GMAASHWPWFKKME 225 5***********************************888899************************9.555669*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MASCDDDFPL LGDDHHHHQA NPNHPHHIFQ QQSPYAPHRF APRHAQQPQS QQIPDTIGVQ 60 CGDEVEGEND ADSAFTYDNN SNNQAILDVR TEKRKDREDV NNGDVTNTGS SPSPSPSPSP 120 YTCKKAKSYS NEYRKDREEW SDAAIACLLD AYLDKFTQLN RGNLRGRDWE EVAATVSERC 180 EKLNKSVEQC KNKVDNLKKR YKLERHRMTN GGMAASHWPW FKKMEEIVGN SLPIKTVTDD 240 DKASGSSTNS IRQTKRYVAA TPIPTGQINN VKAKPNPRWR RVVFKISGVA LAGTGQNNID 300 SKVAMLISRE VATACRLGVE VLTPSIIFVC KTGNLIATYF FLVVAIVVGG SNFFCGDTWV 360 TETGYDRSTA YQIGMMASVM NSVLLQSAFE KMSVQARVQT AFTLPEVTEP YNRQRAIRHL 420 EKGRVVIFGG IGSGVANPLF STDMAAALRA SEIHAEVVLK GTNVDGVYDC HSRDNNATFE 480 HISFRELGSR GAIPMDSTAL SFCDENSIPV VVFNLLEPGN ISKAICGDQV GTFIDRTGRM 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MASCDDDFPL LGDDHHHHQA NPNHPHHIFQ QQSPYAPHRF APRHAQQPQS QQIPDTIGVQ  60
CGDEVEGEND ADSAFTYDNN SNNQAILDVR TEKRKDREDV NNGDVTNTGS SPSPSPSPSP  120
YTCKKAKSYS NEYRKDREEW SDAAIACLLD AYLDKFTQLN RGNLRGRDWE EVAATVSERC  180
EKLNKSVEQC KNKVDNLKKR YKLERHRMTN GGMAASHWPW FKKMEEIVGN SLPIKTVTDD  240
DKASGSSTNS IRQTKRYVAA TPIPTGQINN VKAKPNPRWR RVVFKISGVA LAGTGQNNID  300
SKVAMLISRE VATACRLGVE VLTPSIIFVC KTGNLIATYF FLVVAIVVGG SNFFCGDTWV  360
TETGYDRSTA YQIGMMASVM NSVLLQSAFE KMSVQARVQT AFTLPEVTEP YNRQRAIRHL  420
EKGRVVIFGG IGSGVANPLF STDMAAALRA SEIHAEVVLK GTNVDGVYDC HSRDNNATFE  480
HISFRELGSR GAIPMDSTAL SFCDENSIPV VVFNLLEPGN ISKAICGDQV GTFIDRTGRM  540
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein