PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY33261.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 593aa MW: 67608.2 Da PI: 6.8999

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY33261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.6	9.6e-30	140	225	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea GAY33261.1 140 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 225 8***********************************999*************************98..55667*****85 PP
2	trihelix	60.5	4.1e-19	440	515	2	75
trihelix 2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 Wt++e+ Li++r+ me r++++ +++++lWeev++km g+e+++ +Ck+kw+ +n+++ k+k+g +k+++es GAY33261.1 440 WTDSETTRLINLRTGMEARFQQSgcNSQEALWEEVASKMICLGYEKNALMCKDKWDCINNYMSKTKAGGNKKRKES 515 *******************9655699*************************************999875554 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MEMEDHHPHS HQQQPQPQPQ HEYGMPDLRQ FITNRPSHHF PGIPQAAAAE LFPGHHRNLT 60 PQQGHHHHRH HHYEMLMMPR GLQDFTTPAP TTTTSAAANN VNNTTSNNTV TTASVSTPPS 120 FSGFEGDVAA SFGGDGGNGR WPRQETLTLL EIRSRLDSKF KEANQKGPLW DEVSRIMSEE 180 HGYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKHYRFF RQLEALYGDT SNSVSFQETH 240 LVGSSSLRFN HSTTQHQEPN FHSSSHQNKL CDNSLSLSNN SSEFNSSSSD DDDNDLSTME 300 NDSTEKRRKK RGGRSWKAKI KEFIDSQMRK LMEKQEAWLE KLTKTLEQKE QERVLREEEW 360 RRQEQDRIDK EHKFWAKERA WIESRDAALM ETLQNLTGKQ LKAPSSTEEL MAAAVDADDD 420 QLQNNSDTNN GETVSNKYSW TDSETTRLIN LRTGMEARFQ QSGCNSQEAL WEEVASKMIC 480 LGYEKNALMC KDKWDCINNY MSKTKAGGNK KRKESYSRSS SGYLPSSESC LYSQGTAYET 540 ARLQLNDSSS PGAASNSNVG NNAVSDSCFR FLMADGDHLW ENYGLRLSNG ENQ

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MEMEDHHPHS HQQQPQPQPQ HEYGMPDLRQ FITNRPSHHF PGIPQAAAAE LFPGHHRNLT  60
PQQGHHHHRH HHYEMLMMPR GLQDFTTPAP TTTTSAAANN VNNTTSNNTV TTASVSTPPS  120
FSGFEGDVAA SFGGDGGNGR WPRQETLTLL EIRSRLDSKF KEANQKGPLW DEVSRIMSEE  180
HGYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKHYRFF RQLEALYGDT SNSVSFQETH  240
LVGSSSLRFN HSTTQHQEPN FHSSSHQNKL CDNSLSLSNN SSEFNSSSSD DDDNDLSTME  300
NDSTEKRRKK RGGRSWKAKI KEFIDSQMRK LMEKQEAWLE KLTKTLEQKE QERVLREEEW  360
RRQEQDRIDK EHKFWAKERA WIESRDAALM ETLQNLTGKQ LKAPSSTEEL MAAAVDADDD  420
QLQNNSDTNN GETVSNKYSW TDSETTRLIN LRTGMEARFQ QSGCNSQEAL WEEVASKMIC  480
LGYEKNALMC KDKWDCINNY MSKTKAGGNK KRKESYSRSS SGYLPSSESC LYSQGTAYET  540
ARLQLNDSSS PGAASNSNVG NNAVSDSCFR FLMADGDHLW ENYGLRLSNG ENQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	334	KRRKKRGGRSWKAKIKEFIDSQMRKLMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-109	Trihelix family protein