PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY32632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 30598.9 Da PI: 9.9956 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H GAY32632.1 33 KSKPCTKFFSTAGCPFGESCHFLH 56 7789******************** PP | |||||||
2 | zf-CCCH | 21.2 | 5.1e-07 | 108 | 121 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 Ck+Gd+C+FaHg+ GAY32632.1 108 GCKFGDKCHFAHGE 121 6***********96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.6e-12 | 257 | 281 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg GAY32632.1 257 FKTKLCGNFAK-GSCTFGDRCHFAHG 281 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence |
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FSTAGCPFGE SCHFLHYFPG 60 GYNAVAQMMN LPQAVPAPSR NMAVPPPASN GPTVVKSRMC NRLNSAEGCK FGDKCHFAHG 120 EWELGKPIAI SHDDPRAFGA VPGRMGGRYE PPPAPGPAAS FGASATAKIS VDASLAGAII 180 GKGGVNSKQI CRQTGAKLSI RDHEADPNLR NIELEGSFEQ IKQASAMVRE LIVRIGPAHA 240 KNPATAGSAA HPLSSNFKTK LCGNFAKGSC TFGDRCHFAH GAVELRKTAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-87 | C3H family protein |