PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY32631.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 34719.9 Da PI: 10.2832 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 5.8e-07 | 143 | 156 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 Ck+Gd+C+FaHg+ GAY32631.1 143 GCKFGDKCHFAHGE 156 6***********96 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 292 | 316 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg GAY32631.1 292 FKTKLCGNFAK-GSCTFGDRCHFAHG 316 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FRFIEVRTKY RKIMSITTDA 60 KALYIHKVIC RNITGVSTAG CPFGESCHFL HYFPGGYNAV AQMMNLPQAV PAPSRNMAVP 120 PPASNGPTVV KSRMCNRLNS AEGCKFGDKC HFAHGEWELG KPIAISHDDP RAFGAVPGRM 180 GGRYEPPPAP GPAASFGASA TAKISVDASL AGAIIGKGGV NSKQICRQTG AKLSIRDHEA 240 DPNLRNIELE GSFEQIKQAS AMVRELIVRI GPAHAKNPAT AGSAAHPLSS NFKTKLCGNF 300 AKGSCTFGDR CHFAHGAVEL RKTAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-80 | C3H family protein |