PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028127676.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 391aa    MW: 44583.5 Da    PI: 6.4472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028127676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07334354526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C  f++ G+C  Gd+C FaHg
  XP_028127676.1 334 ACTEFHK-GQCVKGDSCEFAHG 354
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MNKPLIIVCN KTDLQPLDGI SEEDMKLVME MKSEAMKTVI GQGGDSTNDE EVLLTMSTLT  60
EDGVIAVKNV ACERLLNQRV ELKMKSKKIS DCLNRFHVAM PKPRDQKERP PCIPQAVLEA  120
KAKKEVDQEK RKLERDLENE NGGAGVYSAS LRKHYVLAND EWKEDIMPEI LDGHNVYDFV  180
DPDILQRLEE LEQEEGLRQD QDEGEDVDMD GTELTPEEQE ALAEIRKKKS LLIQQHRIKK  240
STAESRPMVP RKFDKDKKFT SMRMGRQVSS LGLDPTLAIN QARSQSRGRK RERSLDRGNN  300
DGGDAMDAEQ PNKKLRTLSR SRKFHDSFHY SGTACTEFHK GQCVKGDSCE FAHGVLEYWF  360
HPAHYRTQPC KDGTQCRRRV CLATHVAELG E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-28C3H family protein