PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028127003.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 805aa    MW: 89043.5 Da    PI: 6.2454
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028127003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.6e-24171272199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   ++ +
  XP_028127003.1 171 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDGG 262
                     99****************************963.3445679************************************************..4579 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_028127003.1 263 GELRLGIRRA 272
                     999****996 PP
2Auxin_resp115.25.7e-38298377382
      Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+stks+F+v+Y+Pras+++Fvv+++k+ k++++++ +G+Rfkm+f+ +ds+err+sG+v+g+ d+dp+rWpnSkWr+L
  XP_028127003.1 298 NAVSTKSTFHVFYSPRASHADFVVPYQKYIKSITNQIPIGTRFKMKFDVDDSPERRCSGVVTGMCDIDPYRWPNSKWRCL 377
                     799****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    
MEIDLNHAVI EVEKNACGNG DCDKGGGGGG GGWGDGCCLS SSTSSSSSNS SSSLASSSIY  60
MELWHACAGP LSTLPKKGNV VVYFPQGHLE QAVSSSPFPP MEVTNFDLQP QIFCRVMDVQ  120
LLANKENDEV YTQLTLLPLP ELEVVNLEVK DHGELGLDEG GLIPTKTPHM FCKTLTASDT  180
STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVARDLHGVE WKFRHIYRGQ PRRHLLTTGW  240
SIFVSQKNLV SGDAVLFLRD GGGELRLGIR RAVRPRNGLP DSVLGNQNYQ SVLPLVGNAV  300
STKSTFHVFY SPRASHADFV VPYQKYIKSI TNQIPIGTRF KMKFDVDDSP ERRCSGVVTG  360
MCDIDPYRWP NSKWRCLMVR WDDDIVSDRQ ERISPWEIDP SVSLPPLSIQ SSPRLKKLRV  420
GLQATPPDNP IAGGGGFLDF EESIRSSKVL QGQENAGLLS PLYECDKANR PLDFEMQSFA  480
HQSLASNGME KVNFSDFLKS QQPSAYTGFA ESSRFPKVLQ GQEICSLRSL TGKTDVNLGA  540
WARPDLGCNF FNMYQRPKPN FYPLGSEGVR NVYFPSNDIY KGGRDPVMLS HMTNFARENV  600
PFNGSSIQSG VSRDEVRKPN LLNEPPHGKI ASPPTLEANF KNTKDDISNG SMAGCKLFGF  660
SLTGETAMPN SQSSNKRSCT KVHKQGNLVG RAIDLSRLDG YNDLLIELER LFSMEGLLRD  720
PNKGWRILYT DSENDMMVVG DDPWHEFCNV VSKIHIHTQE EVEKMTFGMI SDDTQSCLEE  780
AQAVVDVSKS SSVGQPDSPP TVIRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein