PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126951.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1716aa MW: 188227 Da PI: 6.049

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.8e-07	785	826	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WTteE +++ d + +G++ + +Ia+ + ++t +c+ +++k XP_028126951.1 785 PWTTEEKDIFMDKLATFGKD-FGKIASFLD-HKTTADCIVFYYK 826 8***************99.*****.******99998 PP
2	Myb_DNA-binding	27.3	8.2e-09	1005	1045	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +E ++++av +G++ ++ I+r++ +++ qck ++ k XP_028126951.1 1005 WTDQEKSIFIQAVSSYGKD-FTMISRCVR-TKSMDQCKAFFSK 1045 ***************99.*****.******99866 PP

Sequence ? help Back to Top
Protein Sequence Length: 1716 aa Download sequence
MPPAPEPVPW DRKDFFKERK HERSSDSLGS VSRWRETPHH REFRSRPPGH GKQGSWHMYP 60 EEFGHGFTPS RSNEKNLDDV GCRPSGSRGD GNADVNSREY RVSFSQKDWK GHSWENGNGS 120 WPFAPGGPLD VSYQRSVDDM LTYNSHPHSD FVNTWEQLNF KDQHDKIGSV NGLGTGQRFD 180 RENSMGSIDW KPLKWTRSGS MSSRGSGFSH SSSSKSMGVD SGEAKVEVQV RNVTPVQSPS 240 GDAVGCATSA APSEEASSRK KPRLGWGEGL AKYEKKKVEG PDDSATKHGM VVCGNIETLH 300 SHILNLSDKS PRVTGLSDCA SPATPSSVAC SSSPGEDKPF AKAANIDNYT SNLSSSPRLF 360 SQNIVEGTDF NLENLELTPI ANLSSSIGEL LQFDDQGSVD SSFLRSTAMN KLLLWKGGIS 420 KALEMTESEI DLLENELKSL ISKSEDICPC PAVISSLQRE CRATPCEELV VTTDAIPRPA 480 PLLLVSSGDM IVEKAVGGFK EHGQVKDEDV DSPGTVTFKF VDPLSSAEAV TLSESVKHGE 540 SSGDLDARKS GKQEVNGSNE EKIEGLSACE GGGQLTTSRS CAAPVVTSLC RDREDTLYDL 600 ILASNKDSAN RASEVFNKLL PSGQCHIDIF RTTSISSLQN DPLIEEKFAK RKRFLRFKER 660 VITLKFRAFQ HLWKEDMRLL SIRKYRAKSQ KKMELCSRSP YNGYQKHRSS IRSRFSSPGG 720 YLSLVSTTEI INFTSKLLSD SQVKLCRNHL KMPALILDKG SSFISSNGLV EDPCAVEKER 780 ATINPWTTEE KDIFMDKLAT FGKDFGKIAS FLDHKTTADC IVFYYKNHKS DCFVKIKKSE 840 FSKKGKSWSN NNYLVTSGKR WNRDTNAASL DMLGAASAIA ANADDGMENQ QKCTSRFLRG 900 VTSNYRASQG DDGMLERSGS LDIFGNERET VAADVLAGIY GAISSEAMSS CITSSVDPGE 960 IYRDQKWQKV GSLMRWPLTP EVTQNVDNDT CSDESCGEMM DPTYWTDQEK SIFIQAVSSY 1020 GKDFTMISRC VRTKSMDQCK AFFSKARKCL GLDTIGPRSG NEGMPRNDDT NDSGSDNEDA 1080 CVMEAGSVTC SQKSGSKIVK DMMLSDLNVN HFESDPAEIM NTQADINRSE NNGTGEIYCE 1140 DPELQSQNMV TDEKQAEGKP KSDFDGIIKM ENNVNSVLVS PDTEAGGDEA NAECTTAGES 1200 LLAKEANDHG ISVSGAEGDA KAVDLELEGQ QTASENDLND KQEENGHSNT SGPSDLNCSD 1260 QDLHTNKNAS ILAADTIAPL EFDVDHKQKK IALELNPPPE PHAISLEHNV SLVNVKTFNT 1320 DVPLRLDFEK VSDKPCQKSA GVDDYNQHQS GHSVLGCTDS SQILRGYPLQ VSMKKEMNGG 1380 IDIDVDSKKL APLQSLSKIE RNFHADVYLS QECFLQKCNS SKAHSSVAQL PFLSQEQKSD 1440 HSKPPSWRSS SGTEKPSRNG DVKLFGQILT HPSSHQKQNE DKGVQNPKLS SHNSNLKING 1500 TDSNSVPAKL DQNNHLGIEN VPTRSYGFWD GHRIRTGFST LPDSGILLAK YPAAFSNYPT 1560 SSSNKDHQQP LHLAVKSNEC NSNGVTVFSN REITSSNGVA DYQFYRRSQE GGARMQPFKV 1620 DMKQRRGEML FSEMQRRNGY EAVSSIQQQG RGGMVGINVV GRGGILVGGA CTTSGVSDPV 1680 AAIKMHYVKS TEQFGGQTGG IIREEESWRG KGDVGM

Sequence ? help Back to Top

Protein Sequence Length: 1716 aa Download sequence

MPPAPEPVPW DRKDFFKERK HERSSDSLGS VSRWRETPHH REFRSRPPGH GKQGSWHMYP  60
EEFGHGFTPS RSNEKNLDDV GCRPSGSRGD GNADVNSREY RVSFSQKDWK GHSWENGNGS  120
WPFAPGGPLD VSYQRSVDDM LTYNSHPHSD FVNTWEQLNF KDQHDKIGSV NGLGTGQRFD  180
RENSMGSIDW KPLKWTRSGS MSSRGSGFSH SSSSKSMGVD SGEAKVEVQV RNVTPVQSPS  240
GDAVGCATSA APSEEASSRK KPRLGWGEGL AKYEKKKVEG PDDSATKHGM VVCGNIETLH  300
SHILNLSDKS PRVTGLSDCA SPATPSSVAC SSSPGEDKPF AKAANIDNYT SNLSSSPRLF  360
SQNIVEGTDF NLENLELTPI ANLSSSIGEL LQFDDQGSVD SSFLRSTAMN KLLLWKGGIS  420
KALEMTESEI DLLENELKSL ISKSEDICPC PAVISSLQRE CRATPCEELV VTTDAIPRPA  480
PLLLVSSGDM IVEKAVGGFK EHGQVKDEDV DSPGTVTFKF VDPLSSAEAV TLSESVKHGE  540
SSGDLDARKS GKQEVNGSNE EKIEGLSACE GGGQLTTSRS CAAPVVTSLC RDREDTLYDL  600
ILASNKDSAN RASEVFNKLL PSGQCHIDIF RTTSISSLQN DPLIEEKFAK RKRFLRFKER  660
VITLKFRAFQ HLWKEDMRLL SIRKYRAKSQ KKMELCSRSP YNGYQKHRSS IRSRFSSPGG  720
YLSLVSTTEI INFTSKLLSD SQVKLCRNHL KMPALILDKG SSFISSNGLV EDPCAVEKER  780
ATINPWTTEE KDIFMDKLAT FGKDFGKIAS FLDHKTTADC IVFYYKNHKS DCFVKIKKSE  840
FSKKGKSWSN NNYLVTSGKR WNRDTNAASL DMLGAASAIA ANADDGMENQ QKCTSRFLRG  900
VTSNYRASQG DDGMLERSGS LDIFGNERET VAADVLAGIY GAISSEAMSS CITSSVDPGE  960
IYRDQKWQKV GSLMRWPLTP EVTQNVDNDT CSDESCGEMM DPTYWTDQEK SIFIQAVSSY  1020
GKDFTMISRC VRTKSMDQCK AFFSKARKCL GLDTIGPRSG NEGMPRNDDT NDSGSDNEDA  1080
CVMEAGSVTC SQKSGSKIVK DMMLSDLNVN HFESDPAEIM NTQADINRSE NNGTGEIYCE  1140
DPELQSQNMV TDEKQAEGKP KSDFDGIIKM ENNVNSVLVS PDTEAGGDEA NAECTTAGES  1200
LLAKEANDHG ISVSGAEGDA KAVDLELEGQ QTASENDLND KQEENGHSNT SGPSDLNCSD  1260
QDLHTNKNAS ILAADTIAPL EFDVDHKQKK IALELNPPPE PHAISLEHNV SLVNVKTFNT  1320
DVPLRLDFEK VSDKPCQKSA GVDDYNQHQS GHSVLGCTDS SQILRGYPLQ VSMKKEMNGG  1380
IDIDVDSKKL APLQSLSKIE RNFHADVYLS QECFLQKCNS SKAHSSVAQL PFLSQEQKSD  1440
HSKPPSWRSS SGTEKPSRNG DVKLFGQILT HPSSHQKQNE DKGVQNPKLS SHNSNLKING  1500
TDSNSVPAKL DQNNHLGIEN VPTRSYGFWD GHRIRTGFST LPDSGILLAK YPAAFSNYPT  1560
SSSNKDHQQP LHLAVKSNEC NSNGVTVFSN REITSSNGVA DYQFYRRSQE GGARMQPFKV  1620
DMKQRRGEML FSEMQRRNGY EAVSSIQQQG RGGMVGINVV GRGGILVGGA CTTSGVSDPV  1680
AAIKMHYVKS TEQFGGQTGG IIREEESWRG KGDVGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-148	MYB family protein