PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126895.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 168aa MW: 19486.4 Da PI: 9.8705

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.5	4.2e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+y+s XP_028126895.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYAS 59 8***********************************************86 PP
2	K-box	74	4.1e-25	83	156	11	84
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +++ + +q+e++ L+++++ Lq+++R+l+Ge+L+ L +k+Lq+Le+qLe slk + +K+++l+++i+el +k XP_028126895.1 83 ASEVQFWQREAESLRQQLQYLQESHRQLMGEELSGLGVKDLQNLENQLEMSLKGVHVRKDQILTDEIKELNRKV 156 6789******************************************************************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDYAST 60 SMKSVIERYN KLKEEQRQLL NPASEVQFWQ REAESLRQQL QYLQESHRQL MGEELSGLGV 120 KDLQNLENQL EMSLKGVHVR KDQILTDEIK ELNRKVLLEK QPEFSVFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-83	MIKC_MADS family protein