PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028126567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24724.4 Da PI: 10.0195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 7e-21 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k + q tfskRr g++K A+EL++LC++e+a+i+fs+ gk+y + XP_028126567.1 16 KIEIKNRLQATFSKRRSGLFKAASELCTLCGVEIAIIVFSPAGKVYSF 63 58889999**************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MAKKPSMGRQ KIKIAKIEIK NRLQATFSKR RSGLFKAASE LCTLCGVEIA IIVFSPAGKV 60 YSFGHPNVDS IIDQFLIRNP PPNTTTRHLI EAHCNASVRE LNLQLTQVLN ELEVMKRQGE 120 TFDHMRKASQ RQYWWEAPID KLGLHELEQL RSSMVELKKN VTNQANKIQV ESTTNPLPFF 180 LVNGSGIVDP FESKTSHINA SSSVTPNVHN FGYYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-51 | M-type_MADS family protein |