PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028126203.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 584aa    MW: 65172.4 Da    PI: 5.9873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028126203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.41.7e-1322145831373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s++++   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+++++++l+++e +     e l+++++++e++P+lkf++
  XP_028126203.1 214 LKQLLIACAKALSENKKDDFENLIEKARSAVSISGEPIQRLGAYMVEGLVARKEASGTNICRTLRCKEPE---GNELLSYMQILYEICPYLKFGY 305
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  + ++le++++rLa + e++++p+ef++ v     d
  XP_028126203.1 306 MAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPSGPPHVRITGIDDPVSKyaRGDSLEAVRKRLAAISEKFNIPVEFHA-VPVFGPD 399
                     *******************************************************999999**************************.688899* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv+++veqe+++n+++F++rf+e+l+yysa+f+s++++lpr+ +eri
  XP_028126203.1 400 VTRDMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVITLVEQESNTNTAPFFARFIETLDYYSAMFESIDVTLPRDRKERI 494
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++r+++aGF++++ls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  XP_028126203.1 495 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYSLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 583
                     **********************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MDSRQIFGYG VTGAELSYSS HPTVPSIPAR LLESLKFGLH NSPNSPFSTY FDFETLTTLS  60
DSQEQHSSTE NLSGASPSYN SSFETSSYLQ QVSPPLDCRQ DSLLSCFGGT SILQDANSGQ  120
NIKYTLQELE TALMGPDDEE EVTTPNPSLG DNKRPQTSGQ SSMAWNQESQ GSHMIQSQPS  180
HTSRYGKPGD GFHTEKRHKV MEEAPLQNIP SGNLKQLLIA CAKALSENKK DDFENLIEKA  240
RSAVSISGEP IQRLGAYMVE GLVARKEASG TNICRTLRCK EPEGNELLSY MQILYEICPY  300
LKFGYMAANG AIAEACRNED RIHIIDFQIA QGTQWLTLLQ ALAARPSGPP HVRITGIDDP  360
VSKYARGDSL EAVRKRLAAI SEKFNIPVEF HAVPVFGPDV TRDMLNVRPG EALAVNFPLQ  420
LHHTPDESVD VNNPRDGLLR MVKSLSPKVI TLVEQESNTN TAPFFARFIE TLDYYSAMFE  480
SIDVTLPRDR KERINVEQHC LARDIVNIIA CEGKERVERH ELFGKWKSRF TMAGFRQYSL  540
SSYVNSVIKS LLRCYSEHYT LVEKDGAMLL GWKDRNLISA SAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-168GRAS family protein