PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125224.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 350aa MW: 39114.6 Da PI: 4.6043

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s XP_028125224.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	17.1	2.2e-07	114	181	13	80
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + e+lq+e+++L++++++ + ++ + L+ s++eL++ e++L +s++++ ++K+ l+ +++++ XP_028125224.1 114 NLEELQREINNLQQQLQMAEDQLSIFEPYVLGFTSMEELESCEKNLLESMNRVMQRKKYLMGDHLSTF 181 67999*************999999999*******************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK 60 RRIEDALSRY VNLADHDRGG ILQNREYLIS TLHKIKNEDD MALEFASPAE LNLNLEELQR 120 EINNLQQQLQ MAEDQLSIFE PYVLGFTSME ELESCEKNLL ESMNRVMQRK KYLMGDHLST 180 FDIQMNSMGQ MFFDTQEEGM PTASFQNELV CWLPENNNGG DNQNHIFGAS TSDHSCIRLG 240 SNSAATIYNE IPNNASAGGV NGEANSIGSG GYPSDDHNSL SHQWHHASTS THDLFSSLIP 300 PTSFPQNDMA SPDVGAVEQL QQVEATQSCP GPPEAELEVE LPSIVQDAKF

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK  60
RRIEDALSRY VNLADHDRGG ILQNREYLIS TLHKIKNEDD MALEFASPAE LNLNLEELQR  120
EINNLQQQLQ MAEDQLSIFE PYVLGFTSME ELESCEKNLL ESMNRVMQRK KYLMGDHLST  180
FDIQMNSMGQ MFFDTQEEGM PTASFQNELV CWLPENNNGG DNQNHIFGAS TSDHSCIRLG  240
SNSAATIYNE IPNNASAGGV NGEANSIGSG GYPSDDHNSL SHQWHHASTS THDLFSSLIP  300
PTSFPQNDMA SPDVGAVEQL QQVEATQSCP GPPEAELEVE LPSIVQDAKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-70	MIKC_MADS family protein