PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028125102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 330aa MW: 36022.8 Da PI: 6.6911 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.1e-08 | 94 | 118 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_028125102.1 94 FKTKLCCKFRA-GTCPYITNCNFAHS 118 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 168 | 193 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_028125102.1 168 YKGRHCKKFYTEEGCPYGDNCTFLHD 193 78888********************7 PP | |||||||
3 | zf-CCCH | 43 | 7.2e-14 | 234 | 259 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_028125102.1 234 WKTRICNKWEMTGYCPFGNKCHFAHG 259 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence |
MDYHRDTEFS GGNVVPVFTG PQSDGGDENW DSGLVDQAVW ATEDDYGAWN REASVDTNSN 60 SNYETRSGSE PPNKKSRNSQ SGDSRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE 120 ELRRPPPNWQ EIVAAHEEER GVSPEPREEF QIPSLGSTGF TGDSQRSYKG RHCKKFYTEE 180 GCPYGDNCTF LHDEQSKARE SVAISLGPGS GGGYGGNGGN SGNSSGSNVK PSNWKTRICN 240 KWEMTGYCPF GNKCHFAHGA QGFEEFVSSV DQLSTCQGVG LGATVKLIYC KLSITGQNTA 300 TASSHPRNCI VMVGGLWREM LGILPLLLRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-96 | C3H family protein |