PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125101.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 354aa MW: 38749.3 Da PI: 6.5777

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.4e-08	94	118	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_028125101.1 94 FKTKLCCKFRA-GTCPYITNCNFAHS 118 69*******.***********8 PP
2	zf-CCCH	18.6	3.3e-06	168	193	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_028125101.1 168 YKGRHCKKFYTEEGCPYGDNCTFLHD 193 78888********************7 PP
3	zf-CCCH	42.9	7.9e-14	234	259	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_028125101.1 234 WKTRICNKWEMTGYCPFGNKCHFAHG 259 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MDYHRDTEFS GGNVVPVFTG PQSDGGDENW DSGLVDQAVW ATEDDYGAWN REASVDTNSN 60 SNYETRSGSE PPNKKSRNSQ SGDSRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE 120 ELRRPPPNWQ EIVAAHEEER GVSPEPREEF QIPSLGSTGF TGDSQRSYKG RHCKKFYTEE 180 GCPYGDNCTF LHDEQSKARE SVAISLGPGS GGGYGGNGGN SGNSSGSNVK PSNWKTRICN 240 KWEMTGYCPF GNKCHFAHGA QELHRYGGGL MEGDARDSSS APPDIKQGSV PSKTPADTVV 300 VSVTSVPHSD GYHVGVPSQR LSNVIQRTGQ RAHQKWKGPD KISRIYGDWI DDVE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MDYHRDTEFS GGNVVPVFTG PQSDGGDENW DSGLVDQAVW ATEDDYGAWN REASVDTNSN  60
SNYETRSGSE PPNKKSRNSQ SGDSRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE  120
ELRRPPPNWQ EIVAAHEEER GVSPEPREEF QIPSLGSTGF TGDSQRSYKG RHCKKFYTEE  180
GCPYGDNCTF LHDEQSKARE SVAISLGPGS GGGYGGNGGN SGNSSGSNVK PSNWKTRICN  240
KWEMTGYCPF GNKCHFAHGA QELHRYGGGL MEGDARDSSS APPDIKQGSV PSKTPADTVV  300
VSVTSVPHSD GYHVGVPSQR LSNVIQRTGQ RAHQKWKGPD KISRIYGDWI DDVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-130	C3H family protein