PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124935.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 349aa MW: 38173.2 Da PI: 7.7306

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	48	124	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ XP_028124935.1 48 CLVDGCSSDLSQCREYHRRHKVCERHSKTPKVTIGGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLEGHNRRRRKPQS 124 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MLGRMGGPAD WSCNRIEDPK VSLMESSSSS GSSKRAKAPS TTSHVVSCLV DGCSSDLSQC 60 REYHRRHKVC ERHSKTPKVT IGGQEQRFCQ QCSRFHSLVE FDEGKRSCRK RLEGHNRRRR 120 KPQSESLSRN PGRFLSNQQG PTLLSFSSSQ LFGSPMMNSA WAETVNAENS TLPYNSNQCL 180 NYIDRHDNFL GSLPHSFGGG NQFKIFHGNN LPDLSEASTC QPLLDPSSAS GTSSHSQKIM 240 FSDGLSRAIV ESDCALSLLS SAPPAETREI GLGHVVQPNP GSSAQSLAHN MHYCDLSQYS 300 QGIESKPLAS FLSSHAGDNA DLHRPGMFQD GPDGPSDSGP HQTLSFRWE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MLGRMGGPAD WSCNRIEDPK VSLMESSSSS GSSKRAKAPS TTSHVVSCLV DGCSSDLSQC  60
REYHRRHKVC ERHSKTPKVT IGGQEQRFCQ QCSRFHSLVE FDEGKRSCRK RLEGHNRRRR  120
KPQSESLSRN PGRFLSNQQG PTLLSFSSSQ LFGSPMMNSA WAETVNAENS TLPYNSNQCL  180
NYIDRHDNFL GSLPHSFGGG NQFKIFHGNN LPDLSEASTC QPLLDPSSAS GTSSHSQKIM  240
FSDGLSRAIV ESDCALSLLS SAPPAETREI GLGHVVQPNP GSSAQSLAHN MHYCDLSQYS  300
QGIESKPLAS FLSSHAGDNA DLHRPGMFQD GPDGPSDSGP HQTLSFRWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	122	KRSCRKRLEGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-44	SBP family protein