PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028124665.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 562aa    MW: 61894 Da    PI: 6.5239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028124665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.63.8e-1091955623374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++++e+A a+s+g++e+a+++L+rl++ a+ +g++ qRl ay++ AL+++l+     l  + p+se     s+e++++++l++e+sP++k+++++
  XP_028124665.1 195 QTVIEVASAISEGKTEAASEILSRLNQVANVRGNSEQRLSAYMLFALRSKLNP----LQYSPPVSELY---SKEHASSTQLLYEASPCFKLGFMA 282
                     7899************************************************9....44444555554...99********************** PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aIlea+ ++ +++H++Df+i+qG Q++ L++aL+++++ pp l+iT++++   g  ++e+l+++g+ L  +A+++gv ++fnv ++ +++dl
  XP_028124665.1 283 ANLAILEATTNAeKKLHVVDFEIGQGDQYIHLIHALSKKTSTPPFLKITTFADFYGGgeEEERLRSVGDGLIALANKVGVCLNFNV-LSLKITDL 376
                     ********99987999*************************************6666999**************************.5999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L v+++E+laVnl+++l++l+desv++e+ rde+L+ vk+l P vv+vveqe++ n+++F++r++e   yysalfds++a+++re++er+ 
  XP_028124665.1 377 SLETLGVESNEVLAVNLAFRLYKLPDESVTTENLRDELLRRVKGLFPAVVTVVEQEMNSNTAPFVARVTEVYGYYSALFDSVDATVSRETSERVR 471
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+  l+r+  n vaceg++r+er+e ++kWr+r+++aGF+p pls+++a++  + ++     + g++v+ee+g + +gW++r+L+++SaWr
  XP_028124665.1 472 IEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMGMAGFEPKPLSQHVADSLLARVNSGTrgNPGFTVKEENGGVWFGWMGRTLTVASAWR 562
                     ****.********************************************99987777654445889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MSGFSGGSPD FYTANGYTGR SMGMNNPQGS YPISSASQIL HRRHELIGKR SLAEFQSHQQ  60
QQQQLGLYLR NVKPRTYQHA SPISPLSPVD FSASISPNVS SISSILQQLR PQPIIPPSLL  120
PHRFIKQEQS EKTMMNRLQE LEKQLLDDND DDEADTVSVI TNSAWSETIQ SLISPSPTSS  180
SSSASVSAPP ICPKQTVIEV ASAISEGKTE AASEILSRLN QVANVRGNSE QRLSAYMLFA  240
LRSKLNPLQY SPPVSELYSK EHASSTQLLY EASPCFKLGF MAANLAILEA TTNAEKKLHV  300
VDFEIGQGDQ YIHLIHALSK KTSTPPFLKI TTFADFYGGG EEEERLRSVG DGLIALANKV  360
GVCLNFNVLS LKITDLSLET LGVESNEVLA VNLAFRLYKL PDESVTTENL RDELLRRVKG  420
LFPAVVTVVE QEMNSNTAPF VARVTEVYGY YSALFDSVDA TVSRETSERV RIEEGLSRKM  480
ANSVACEGRD RVERCEVFGK WRARMGMAGF EPKPLSQHVA DSLLARVNSG TRGNPGFTVK  540
EENGGVWFGW MGRTLTVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-148GRAS family protein